Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1163

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1162 and Shewana3_1163 are separated by 268 nucleotidesShewana3_1163 and Shewana3_1164 are separated by 201 nucleotides Shewana3_1162: Shewana3_1162 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,372,641 to 1,373,870 _1162 Shewana3_1163: Shewana3_1163 - hypothetical protein (RefSeq), at 1,374,139 to 1,374,648 _1163 Shewana3_1164: Shewana3_1164 - hypothetical protein (RefSeq), at 1,374,850 to 1,375,803 _1164 Position (kb) 1374 1375Strain fitness (log2 ratio) -1 0 1at 1373.180 kb on + strand, within Shewana3_1162at 1373.390 kb on - strand, within Shewana3_1162at 1373.575 kb on - strand, within Shewana3_1162at 1373.698 kb on + strand, within Shewana3_1162at 1374.007 kb on - strandat 1374.248 kb on + strand, within Shewana3_1163at 1374.396 kb on + strand, within Shewana3_1163at 1375.093 kb on - strand, within Shewana3_1164at 1375.156 kb on + strand, within Shewana3_1164at 1375.262 kb on + strand, within Shewana3_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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1,373,180 + Shewana3_1162 0.44 -0.2
1,373,390 - Shewana3_1162 0.61 +0.0
1,373,575 - Shewana3_1162 0.76 +0.6
1,373,698 + Shewana3_1162 0.86 +0.3
1,374,007 - +0.1
1,374,248 + Shewana3_1163 0.21 +0.6
1,374,396 + Shewana3_1163 0.50 -1.4
1,375,093 - Shewana3_1164 0.25 +0.6
1,375,156 + Shewana3_1164 0.32 -1.6
1,375,262 + Shewana3_1164 0.43 -0.2

Or see this region's nucleotide sequence