Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1012

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1010 and Shewana3_1011 are separated by 167 nucleotidesShewana3_1011 and Shewana3_1012 are separated by 139 nucleotidesShewana3_1012 and Shewana3_R0031 are separated by 207 nucleotidesShewana3_R0031 and Shewana3_R0032 are separated by 54 nucleotidesShewana3_R0032 and Shewana3_R0033 are separated by 47 nucleotidesShewana3_R0033 and Shewana3_R0034 are separated by 22 nucleotidesShewana3_R0034 and Shewana3_R0035 are separated by 1 nucleotidesShewana3_R0035 and Shewana3_R0036 are separated by 83 nucleotidesShewana3_R0036 and Shewana3_R0037 are separated by 36 nucleotides Shewana3_1010: Shewana3_1010 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq), at 1,180,756 to 1,181,982 _1010 Shewana3_1011: Shewana3_1011 - peptidyl-tRNA hydrolase (RefSeq), at 1,182,150 to 1,182,737 _1011 Shewana3_1012: Shewana3_1012 - GTP-dependent nucleic acid-binding protein EngD (RefSeq), at 1,182,877 to 1,183,968 _1012 Shewana3_R0031: Shewana3_R0031 - tRNA-Met (RefSeq), at 1,184,176 to 1,184,252 _R0031 Shewana3_R0032: Shewana3_R0032 - tRNA-Leu (RefSeq), at 1,184,307 to 1,184,391 _R0032 Shewana3_R0033: Shewana3_R0033 - tRNA-Gln (RefSeq), at 1,184,439 to 1,184,513 _R0033 Shewana3_R0034: Shewana3_R0034 - tRNA-Gln (RefSeq), at 1,184,536 to 1,184,610 _R0034 Shewana3_R0035: Shewana3_R0035 - tRNA-Met (RefSeq), at 1,184,612 to 1,184,688 _R0035 Shewana3_R0036: Shewana3_R0036 - tRNA-Leu (RefSeq), at 1,184,772 to 1,184,856 _R0036 Shewana3_R0037: Shewana3_R0037 - tRNA-Gln (RefSeq), at 1,184,893 to 1,184,967 _R0037 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -2 -1 0 1at 1182.003 kb on - strandat 1182.689 kb on + strandat 1182.711 kb on + strandat 1182.722 kb on + strandat 1182.740 kb on - strandat 1182.802 kb on + strandat 1182.802 kb on + strandat 1182.810 kb on - strandat 1182.881 kb on - strandat 1183.108 kb on - strand, within Shewana3_1012at 1183.230 kb on + strand, within Shewana3_1012at 1183.292 kb on + strand, within Shewana3_1012at 1183.292 kb on + strand, within Shewana3_1012at 1183.300 kb on - strand, within Shewana3_1012at 1183.469 kb on + strand, within Shewana3_1012at 1183.655 kb on + strand, within Shewana3_1012at 1183.693 kb on + strand, within Shewana3_1012at 1183.757 kb on - strand, within Shewana3_1012at 1183.819 kb on + strand, within Shewana3_1012at 1183.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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1,182,003 - +0.4
1,182,689 + -0.6
1,182,711 + -2.7
1,182,722 + -0.6
1,182,740 - -1.6
1,182,802 + -0.2
1,182,802 + -0.2
1,182,810 - -1.4
1,182,881 - +1.0
1,183,108 - Shewana3_1012 0.21 -1.2
1,183,230 + Shewana3_1012 0.32 -0.5
1,183,292 + Shewana3_1012 0.38 -1.5
1,183,292 + Shewana3_1012 0.38 -1.1
1,183,300 - Shewana3_1012 0.39 -1.3
1,183,469 + Shewana3_1012 0.54 -1.7
1,183,655 + Shewana3_1012 0.71 -1.1
1,183,693 + Shewana3_1012 0.75 -1.0
1,183,757 - Shewana3_1012 0.81 -0.3
1,183,819 + Shewana3_1012 0.86 -0.8
1,183,916 + -0.2

Or see this region's nucleotide sequence