Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pntB and pntA are separated by 11 nucleotides pntA and Shewana3_0855 are separated by 417 nucleotides
Shewana3_0853: pntB - pyridine nucleotide transhydrogenase (RefSeq), at 989,925 to 991,409
pntB
Shewana3_0854: pntA - NAD(P) transhydrogenase subunit alpha (RefSeq), at 991,421 to 992,947
pntA
Shewana3_0855: Shewana3_0855 - sulfite reductase (NADPH) alpha subunit (RefSeq), at 993,365 to 995,179
_0855
Position (kb) 991
992
993 Strain fitness (log2 ratio) -2
-1
0
1 at 990.541 kb on + strand, within pntB at 990.541 kb on + strand, within pntB at 990.549 kb on - strand, within pntB at 990.616 kb on - strand, within pntB at 990.616 kb on - strand, within pntB at 990.879 kb on + strand, within pntB at 990.879 kb on + strand, within pntB at 990.964 kb on + strand, within pntB at 991.008 kb on + strand, within pntB at 991.040 kb on - strand, within pntB at 991.115 kb on - strand, within pntB at 991.416 kb on - strand at 991.418 kb on + strand at 991.426 kb on - strand at 991.525 kb on + strand at 991.633 kb on - strand, within pntA at 991.633 kb on - strand, within pntA at 991.633 kb on - strand, within pntA at 991.650 kb on + strand, within pntA at 991.730 kb on + strand, within pntA at 991.738 kb on - strand, within pntA at 991.788 kb on + strand, within pntA at 991.863 kb on + strand, within pntA at 991.871 kb on - strand, within pntA at 991.894 kb on - strand, within pntA at 991.976 kb on - strand, within pntA at 992.019 kb on - strand, within pntA at 992.183 kb on - strand, within pntA at 992.185 kb on - strand, within pntA at 992.208 kb on + strand, within pntA at 992.265 kb on + strand, within pntA at 992.391 kb on - strand, within pntA at 992.391 kb on - strand, within pntA at 992.567 kb on - strand, within pntA at 992.631 kb on + strand, within pntA at 992.674 kb on + strand, within pntA at 992.692 kb on - strand, within pntA at 992.997 kb on + strand at 993.013 kb on + strand at 993.021 kb on - strand at 993.021 kb on - strand at 993.132 kb on - strand at 993.349 kb on + strand at 993.349 kb on + strand at 993.357 kb on - strand at 993.477 kb on - strand at 993.528 kb on - strand at 993.561 kb on - strand, within Shewana3_0855 at 993.642 kb on - strand, within Shewana3_0855 at 993.655 kb on - strand, within Shewana3_0855 at 993.662 kb on + strand, within Shewana3_0855 at 993.860 kb on + strand, within Shewana3_0855 at 993.921 kb on + strand, within Shewana3_0855
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 990,541 + pntB Shewana3_0853 0.41 -2.2 990,541 + pntB Shewana3_0853 0.41 -1.6 990,549 - pntB Shewana3_0853 0.42 -2.5 990,616 - pntB Shewana3_0853 0.47 -1.6 990,616 - pntB Shewana3_0853 0.47 -1.7 990,879 + pntB Shewana3_0853 0.64 -0.1 990,879 + pntB Shewana3_0853 0.64 +0.3 990,964 + pntB Shewana3_0853 0.70 -1.6 991,008 + pntB Shewana3_0853 0.73 -1.3 991,040 - pntB Shewana3_0853 0.75 -1.2 991,115 - pntB Shewana3_0853 0.80 -1.9 991,416 - -1.6 991,418 + -1.8 991,426 - -0.7 991,525 + -0.4 991,633 - pntA Shewana3_0854 0.14 -1.2 991,633 - pntA Shewana3_0854 0.14 -1.5 991,633 - pntA Shewana3_0854 0.14 -1.2 991,650 + pntA Shewana3_0854 0.15 -0.2 991,730 + pntA Shewana3_0854 0.20 +1.3 991,738 - pntA Shewana3_0854 0.21 -1.6 991,788 + pntA Shewana3_0854 0.24 -1.7 991,863 + pntA Shewana3_0854 0.29 -1.2 991,871 - pntA Shewana3_0854 0.29 -1.6 991,894 - pntA Shewana3_0854 0.31 -1.2 991,976 - pntA Shewana3_0854 0.36 -1.5 992,019 - pntA Shewana3_0854 0.39 -0.2 992,183 - pntA Shewana3_0854 0.50 -1.5 992,185 - pntA Shewana3_0854 0.50 -1.4 992,208 + pntA Shewana3_0854 0.52 -0.2 992,265 + pntA Shewana3_0854 0.55 +0.8 992,391 - pntA Shewana3_0854 0.64 -1.4 992,391 - pntA Shewana3_0854 0.64 -1.4 992,567 - pntA Shewana3_0854 0.75 -0.8 992,631 + pntA Shewana3_0854 0.79 +0.3 992,674 + pntA Shewana3_0854 0.82 -0.2 992,692 - pntA Shewana3_0854 0.83 -1.5 992,997 + -1.2 993,013 + -0.4 993,021 - -0.8 993,021 - -1.2 993,132 - -0.7 993,349 + -0.3 993,349 + -0.6 993,357 - -0.6 993,477 - -0.6 993,528 - +0.4 993,561 - Shewana3_0855 0.11 -0.2 993,642 - Shewana3_0855 0.15 -1.1 993,655 - Shewana3_0855 0.16 -0.4 993,662 + Shewana3_0855 0.16 -0.8 993,860 + Shewana3_0855 0.27 -0.2 993,921 + Shewana3_0855 0.31 -0.7
Or see this region's nucleotide sequence