Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0851 and Shewana3_0852 are separated by 86 nucleotides Shewana3_0852 and pntB are separated by 154 nucleotides pntB and pntA are separated by 11 nucleotides
Shewana3_0851: Shewana3_0851 - TetR family transcriptional regulator (RefSeq), at 988,815 to 989,294
_0851
Shewana3_0852: Shewana3_0852 - hypothetical protein (RefSeq), at 989,381 to 989,770
_0852
Shewana3_0853: pntB - pyridine nucleotide transhydrogenase (RefSeq), at 989,925 to 991,409
pntB
Shewana3_0854: pntA - NAD(P) transhydrogenase subunit alpha (RefSeq), at 991,421 to 992,947
pntA
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -2
-1
0
1 at 989.106 kb on + strand, within Shewana3_0851 at 989.159 kb on + strand, within Shewana3_0851 at 989.167 kb on - strand, within Shewana3_0851 at 989.557 kb on + strand, within Shewana3_0852 at 989.576 kb on + strand, within Shewana3_0852 at 989.720 kb on - strand, within Shewana3_0852 at 989.767 kb on + strand at 989.856 kb on + strand at 989.864 kb on - strand at 989.864 kb on - strand at 989.923 kb on - strand at 990.014 kb on - strand at 990.105 kb on + strand, within pntB at 990.240 kb on + strand, within pntB at 990.299 kb on - strand, within pntB at 990.368 kb on - strand, within pntB at 990.541 kb on + strand, within pntB at 990.541 kb on + strand, within pntB at 990.549 kb on - strand, within pntB at 990.616 kb on - strand, within pntB at 990.616 kb on - strand, within pntB at 990.879 kb on + strand, within pntB at 990.879 kb on + strand, within pntB at 990.964 kb on + strand, within pntB at 991.008 kb on + strand, within pntB at 991.040 kb on - strand, within pntB at 991.115 kb on - strand, within pntB at 991.416 kb on - strand at 991.418 kb on + strand at 991.426 kb on - strand at 991.525 kb on + strand at 991.633 kb on - strand, within pntA at 991.633 kb on - strand, within pntA at 991.633 kb on - strand, within pntA at 991.650 kb on + strand, within pntA at 991.730 kb on + strand, within pntA at 991.738 kb on - strand, within pntA at 991.788 kb on + strand, within pntA at 991.863 kb on + strand, within pntA at 991.871 kb on - strand, within pntA at 991.894 kb on - strand, within pntA at 991.976 kb on - strand, within pntA at 992.019 kb on - strand, within pntA at 992.183 kb on - strand, within pntA at 992.185 kb on - strand, within pntA at 992.208 kb on + strand, within pntA at 992.265 kb on + strand, within pntA at 992.391 kb on - strand, within pntA at 992.391 kb on - strand, within pntA
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 989,106 + Shewana3_0851 0.61 -0.3 989,159 + Shewana3_0851 0.72 +0.3 989,167 - Shewana3_0851 0.73 +0.8 989,557 + Shewana3_0852 0.45 +0.8 989,576 + Shewana3_0852 0.50 +0.5 989,720 - Shewana3_0852 0.87 +0.8 989,767 + +0.1 989,856 + -0.4 989,864 - -0.2 989,864 - +0.3 989,923 - -0.4 990,014 - -1.3 990,105 + pntB Shewana3_0853 0.12 +0.8 990,240 + pntB Shewana3_0853 0.21 -0.8 990,299 - pntB Shewana3_0853 0.25 -1.8 990,368 - pntB Shewana3_0853 0.30 -1.3 990,541 + pntB Shewana3_0853 0.41 -2.2 990,541 + pntB Shewana3_0853 0.41 -1.6 990,549 - pntB Shewana3_0853 0.42 -2.5 990,616 - pntB Shewana3_0853 0.47 -1.6 990,616 - pntB Shewana3_0853 0.47 -1.7 990,879 + pntB Shewana3_0853 0.64 -0.1 990,879 + pntB Shewana3_0853 0.64 +0.3 990,964 + pntB Shewana3_0853 0.70 -1.6 991,008 + pntB Shewana3_0853 0.73 -1.3 991,040 - pntB Shewana3_0853 0.75 -1.2 991,115 - pntB Shewana3_0853 0.80 -1.9 991,416 - -1.6 991,418 + -1.8 991,426 - -0.7 991,525 + -0.4 991,633 - pntA Shewana3_0854 0.14 -1.2 991,633 - pntA Shewana3_0854 0.14 -1.5 991,633 - pntA Shewana3_0854 0.14 -1.2 991,650 + pntA Shewana3_0854 0.15 -0.2 991,730 + pntA Shewana3_0854 0.20 +1.3 991,738 - pntA Shewana3_0854 0.21 -1.6 991,788 + pntA Shewana3_0854 0.24 -1.7 991,863 + pntA Shewana3_0854 0.29 -1.2 991,871 - pntA Shewana3_0854 0.29 -1.6 991,894 - pntA Shewana3_0854 0.31 -1.2 991,976 - pntA Shewana3_0854 0.36 -1.5 992,019 - pntA Shewana3_0854 0.39 -0.2 992,183 - pntA Shewana3_0854 0.50 -1.5 992,185 - pntA Shewana3_0854 0.50 -1.4 992,208 + pntA Shewana3_0854 0.52 -0.2 992,265 + pntA Shewana3_0854 0.55 +0.8 992,391 - pntA Shewana3_0854 0.64 -1.4 992,391 - pntA Shewana3_0854 0.64 -1.4
Or see this region's nucleotide sequence