Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0848 and Shewana3_0849 are separated by 177 nucleotides Shewana3_0849 and Shewana3_0850 overlap by 4 nucleotides Shewana3_0850 and Shewana3_0851 are separated by 153 nucleotides
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837
_0849
Shewana3_0850: Shewana3_0850 - hypothetical protein (RefSeq), at 987,834 to 988,661
_0850
Shewana3_0851: Shewana3_0851 - TetR family transcriptional regulator (RefSeq), at 988,815 to 989,294
_0851
Position (kb) 986
987
988 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 986.400 kb on - strand at 986.450 kb on - strand at 986.531 kb on + strand at 986.550 kb on - strand, within Shewana3_0849 at 986.550 kb on - strand, within Shewana3_0849 at 986.617 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.785 kb on + strand, within Shewana3_0849 at 986.829 kb on - strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.848 kb on - strand, within Shewana3_0849 at 986.969 kb on + strand, within Shewana3_0849 at 987.026 kb on + strand, within Shewana3_0849 at 987.086 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.118 kb on + strand, within Shewana3_0849 at 987.119 kb on + strand, within Shewana3_0849 at 987.136 kb on + strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.283 kb on + strand, within Shewana3_0849 at 987.338 kb on + strand, within Shewana3_0849 at 987.346 kb on - strand, within Shewana3_0849 at 987.409 kb on - strand, within Shewana3_0849 at 987.472 kb on + strand, within Shewana3_0849 at 987.510 kb on - strand, within Shewana3_0849 at 987.774 kb on - strand at 987.859 kb on + strand at 988.012 kb on + strand, within Shewana3_0850 at 988.019 kb on + strand, within Shewana3_0850 at 988.027 kb on - strand, within Shewana3_0850 at 988.768 kb on + strand at 988.786 kb on - strand at 988.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 986,400 - -1.9 986,450 - -2.9 986,531 + -3.8 986,550 - Shewana3_0849 0.10 -2.7 986,550 - Shewana3_0849 0.10 -4.2 986,617 + Shewana3_0849 0.15 -2.1 986,717 + Shewana3_0849 0.22 -2.6 986,717 + Shewana3_0849 0.22 -2.1 986,725 - Shewana3_0849 0.22 -0.8 986,725 - Shewana3_0849 0.22 -1.2 986,785 + Shewana3_0849 0.26 -4.5 986,829 - Shewana3_0849 0.29 -2.9 986,840 + Shewana3_0849 0.30 -4.1 986,840 + Shewana3_0849 0.30 -2.8 986,848 - Shewana3_0849 0.31 -0.2 986,969 + Shewana3_0849 0.39 -3.5 987,026 + Shewana3_0849 0.43 -2.0 987,086 - Shewana3_0849 0.47 -1.6 987,096 - Shewana3_0849 0.48 -0.4 987,096 - Shewana3_0849 0.48 +0.8 987,112 + Shewana3_0849 0.49 -2.1 987,112 + Shewana3_0849 0.49 -1.6 987,118 + Shewana3_0849 0.50 -2.6 987,119 + Shewana3_0849 0.50 -3.2 987,136 + Shewana3_0849 0.51 -3.7 987,172 - Shewana3_0849 0.53 -1.6 987,172 - Shewana3_0849 0.53 -1.2 987,283 + Shewana3_0849 0.61 -1.4 987,338 + Shewana3_0849 0.65 -2.9 987,346 - Shewana3_0849 0.66 -1.5 987,409 - Shewana3_0849 0.70 -4.6 987,472 + Shewana3_0849 0.74 -3.8 987,510 - Shewana3_0849 0.77 -0.6 987,774 - -2.6 987,859 + -0.1 988,012 + Shewana3_0850 0.21 +1.1 988,019 + Shewana3_0850 0.22 +0.0 988,027 - Shewana3_0850 0.23 -0.0 988,768 + -0.2 988,786 - +0.8 988,832 + +0.3
Or see this region's nucleotide sequence