Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0678 and Shewana3_0679 overlap by 4 nucleotides Shewana3_0679 and Shewana3_0680 are separated by 54 nucleotides Shewana3_0680 and Shewana3_0681 are separated by 11 nucleotides
Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277
_0678
Shewana3_0679: Shewana3_0679 - hypothetical protein (RefSeq), at 798,274 to 799,059
_0679
Shewana3_0680: Shewana3_0680 - hypothetical protein (RefSeq), at 799,114 to 799,587
_0680
Shewana3_0681: Shewana3_0681 - toluene tolerance family protein (RefSeq), at 799,599 to 800,252
_0681
Position (kb) 798
799
800 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 797.366 kb on - strand at 797.409 kb on + strand at 797.651 kb on + strand, within Shewana3_0678 at 797.664 kb on + strand, within Shewana3_0678 at 797.778 kb on + strand, within Shewana3_0678 at 798.117 kb on + strand, within Shewana3_0678 at 798.188 kb on + strand, within Shewana3_0678 at 798.207 kb on + strand at 798.207 kb on + strand at 798.248 kb on + strand at 798.521 kb on + strand, within Shewana3_0679 at 798.550 kb on + strand, within Shewana3_0679 at 798.727 kb on + strand, within Shewana3_0679 at 798.925 kb on + strand, within Shewana3_0679 at 798.938 kb on + strand, within Shewana3_0679 at 798.973 kb on + strand, within Shewana3_0679 at 798.983 kb on + strand at 799.210 kb on + strand, within Shewana3_0680 at 799.229 kb on + strand, within Shewana3_0680 at 799.303 kb on + strand, within Shewana3_0680 at 799.451 kb on + strand, within Shewana3_0680 at 799.549 kb on + strand at 799.679 kb on + strand, within Shewana3_0681 at 799.687 kb on + strand, within Shewana3_0681 at 799.743 kb on + strand, within Shewana3_0681 at 799.803 kb on + strand, within Shewana3_0681 at 799.811 kb on + strand, within Shewana3_0681 at 799.845 kb on + strand, within Shewana3_0681 at 799.915 kb on + strand, within Shewana3_0681
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 797,366 - -0.2 797,409 + -0.6 797,651 + Shewana3_0678 0.23 -2.6 797,664 + Shewana3_0678 0.25 -1.5 797,778 + Shewana3_0678 0.39 -1.0 798,117 + Shewana3_0678 0.80 -3.0 798,188 + Shewana3_0678 0.89 +0.1 798,207 + -0.5 798,207 + -1.1 798,248 + -1.6 798,521 + Shewana3_0679 0.31 -4.4 798,550 + Shewana3_0679 0.35 -2.4 798,727 + Shewana3_0679 0.58 -3.0 798,925 + Shewana3_0679 0.83 -2.5 798,938 + Shewana3_0679 0.84 -1.6 798,973 + Shewana3_0679 0.89 -2.3 798,983 + -1.3 799,210 + Shewana3_0680 0.20 -2.5 799,229 + Shewana3_0680 0.24 -1.9 799,303 + Shewana3_0680 0.40 -4.2 799,451 + Shewana3_0680 0.71 -3.1 799,549 + -4.3 799,679 + Shewana3_0681 0.12 +0.3 799,687 + Shewana3_0681 0.13 -1.5 799,743 + Shewana3_0681 0.22 -4.9 799,803 + Shewana3_0681 0.31 -2.5 799,811 + Shewana3_0681 0.32 -3.2 799,845 + Shewana3_0681 0.38 -3.9 799,915 + Shewana3_0681 0.48 -2.6
Or see this region's nucleotide sequence