Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0273 and moaA are separated by 340 nucleotides moaA and moaC are separated by 112 nucleotides moaC and Shewana3_0276 are separated by 19 nucleotides Shewana3_0276 and Shewana3_0277 are separated by 1 nucleotides
Shewana3_0273: Shewana3_0273 - electron transfer flavoprotein-ubiquinone oxidoreductase (RefSeq), at 307,775 to 309,424
_0273
Shewana3_0274: moaA - molybdenum cofactor biosynthesis protein A (RefSeq), at 309,765 to 310,778
moaA
Shewana3_0275: moaC - molybdenum cofactor biosynthesis protein C (RefSeq), at 310,891 to 311,370
moaC
Shewana3_0276: Shewana3_0276 - molybdopterin synthase subunit MoaD (RefSeq), at 311,390 to 311,641
_0276
Shewana3_0277: Shewana3_0277 - molybdopterin synthase subunit MoaE (RefSeq), at 311,643 to 312,110
_0277
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 308.901 kb on - strand, within Shewana3_0273 at 309.045 kb on - strand, within Shewana3_0273 at 309.060 kb on + strand, within Shewana3_0273 at 309.317 kb on + strand at 309.362 kb on + strand at 309.512 kb on - strand at 309.539 kb on - strand at 309.540 kb on + strand at 309.597 kb on - strand at 309.610 kb on + strand at 309.642 kb on + strand at 309.733 kb on - strand at 309.880 kb on + strand, within moaA at 309.898 kb on - strand, within moaA at 310.014 kb on - strand, within moaA at 310.024 kb on - strand, within moaA at 310.109 kb on - strand, within moaA at 310.121 kb on - strand, within moaA at 310.134 kb on + strand, within moaA at 310.134 kb on + strand, within moaA at 310.134 kb on + strand, within moaA at 310.134 kb on + strand, within moaA at 310.142 kb on - strand, within moaA at 310.158 kb on + strand, within moaA at 310.218 kb on + strand, within moaA at 310.402 kb on - strand, within moaA at 310.496 kb on - strand, within moaA at 310.554 kb on - strand, within moaA at 310.573 kb on - strand, within moaA at 310.709 kb on + strand at 310.893 kb on - strand at 310.931 kb on - strand at 311.113 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.189 kb on + strand, within moaC at 311.197 kb on - strand, within moaC at 311.197 kb on - strand, within moaC at 311.197 kb on - strand, within moaC at 311.197 kb on - strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.280 kb on + strand, within moaC at 311.288 kb on - strand, within moaC at 311.288 kb on - strand, within moaC at 311.288 kb on - strand, within moaC at 311.288 kb on - strand, within moaC at 311.355 kb on + strand at 311.355 kb on + strand at 311.363 kb on - strand at 311.528 kb on + strand, within Shewana3_0276 at 311.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 308,901 - Shewana3_0273 0.68 -0.6 309,045 - Shewana3_0273 0.77 -0.5 309,060 + Shewana3_0273 0.78 -0.3 309,317 + -0.2 309,362 + -0.3 309,512 - -0.3 309,539 - -0.1 309,540 + -0.3 309,597 - +0.1 309,610 + -0.2 309,642 + -0.3 309,733 - -2.9 309,880 + moaA Shewana3_0274 0.11 -1.1 309,898 - moaA Shewana3_0274 0.13 -2.9 310,014 - moaA Shewana3_0274 0.25 -0.9 310,024 - moaA Shewana3_0274 0.26 -3.1 310,109 - moaA Shewana3_0274 0.34 -1.9 310,121 - moaA Shewana3_0274 0.35 -3.0 310,134 + moaA Shewana3_0274 0.36 -1.3 310,134 + moaA Shewana3_0274 0.36 -0.4 310,134 + moaA Shewana3_0274 0.36 -0.4 310,134 + moaA Shewana3_0274 0.36 -0.6 310,142 - moaA Shewana3_0274 0.37 -1.9 310,158 + moaA Shewana3_0274 0.39 -0.5 310,218 + moaA Shewana3_0274 0.45 -0.3 310,402 - moaA Shewana3_0274 0.63 -3.0 310,496 - moaA Shewana3_0274 0.72 -2.2 310,554 - moaA Shewana3_0274 0.78 -2.4 310,573 - moaA Shewana3_0274 0.80 -2.1 310,709 + +0.1 310,893 - -2.6 310,931 - -2.3 311,113 + moaC Shewana3_0275 0.46 -2.1 311,189 + moaC Shewana3_0275 0.62 -2.1 311,189 + moaC Shewana3_0275 0.62 -3.1 311,189 + moaC Shewana3_0275 0.62 -3.1 311,189 + moaC Shewana3_0275 0.62 -3.8 311,197 - moaC Shewana3_0275 0.64 -3.0 311,197 - moaC Shewana3_0275 0.64 -4.4 311,197 - moaC Shewana3_0275 0.64 -1.9 311,197 - moaC Shewana3_0275 0.64 -2.3 311,280 + moaC Shewana3_0275 0.81 -3.2 311,280 + moaC Shewana3_0275 0.81 -3.1 311,280 + moaC Shewana3_0275 0.81 -3.0 311,280 + moaC Shewana3_0275 0.81 -3.4 311,280 + moaC Shewana3_0275 0.81 -3.3 311,280 + moaC Shewana3_0275 0.81 -2.6 311,280 + moaC Shewana3_0275 0.81 -3.2 311,280 + moaC Shewana3_0275 0.81 -2.4 311,280 + moaC Shewana3_0275 0.81 -3.9 311,288 - moaC Shewana3_0275 0.83 -4.1 311,288 - moaC Shewana3_0275 0.83 -2.9 311,288 - moaC Shewana3_0275 0.83 -2.7 311,288 - moaC Shewana3_0275 0.83 -3.5 311,355 + -0.0 311,355 + -0.1 311,363 - -1.6 311,528 + Shewana3_0276 0.55 -3.9 311,680 + -3.2
Or see this region's nucleotide sequence