Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0158 and Shewana3_0159 are separated by 48 nucleotides Shewana3_0159 and Shewana3_0160 are separated by 1 nucleotides Shewana3_0160 and Shewana3_0161 are separated by 14 nucleotides
Shewana3_0158: Shewana3_0158 - general secretion pathway protein K (RefSeq), at 182,078 to 183,076
_0158
Shewana3_0159: Shewana3_0159 - general secretion pathway protein L (RefSeq), at 183,125 to 184,312
_0159
Shewana3_0160: Shewana3_0160 - general secretion pathway M protein (RefSeq), at 184,314 to 184,790
_0160
Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566
_0161
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 182.202 kb on + strand, within Shewana3_0158 at 182.208 kb on + strand, within Shewana3_0158 at 182.290 kb on - strand, within Shewana3_0158 at 182.300 kb on - strand, within Shewana3_0158 at 182.484 kb on - strand, within Shewana3_0158 at 182.752 kb on + strand, within Shewana3_0158 at 182.753 kb on - strand, within Shewana3_0158 at 182.869 kb on + strand, within Shewana3_0158 at 182.919 kb on - strand, within Shewana3_0158 at 183.175 kb on - strand at 183.224 kb on - strand at 183.594 kb on + strand, within Shewana3_0159 at 183.602 kb on - strand, within Shewana3_0159 at 183.611 kb on + strand, within Shewana3_0159 at 183.634 kb on + strand, within Shewana3_0159 at 183.634 kb on + strand, within Shewana3_0159 at 183.634 kb on + strand, within Shewana3_0159 at 183.642 kb on - strand, within Shewana3_0159 at 183.674 kb on + strand, within Shewana3_0159 at 183.802 kb on - strand, within Shewana3_0159 at 183.805 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.901 kb on - strand, within Shewana3_0159 at 183.921 kb on - strand, within Shewana3_0159 at 183.964 kb on + strand, within Shewana3_0159 at 184.020 kb on - strand, within Shewana3_0159 at 184.049 kb on + strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.107 kb on + strand, within Shewana3_0159 at 184.107 kb on + strand, within Shewana3_0159 at 184.115 kb on - strand, within Shewana3_0159 at 184.115 kb on - strand, within Shewana3_0159 at 184.467 kb on - strand, within Shewana3_0160 at 184.472 kb on + strand, within Shewana3_0160 at 184.472 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.566 kb on - strand, within Shewana3_0160 at 184.576 kb on + strand, within Shewana3_0160 at 184.627 kb on - strand, within Shewana3_0160 at 184.723 kb on + strand, within Shewana3_0160 at 184.947 kb on - strand, within Shewana3_0161 at 185.077 kb on - strand, within Shewana3_0161 at 185.108 kb on + strand, within Shewana3_0161 at 185.146 kb on + strand, within Shewana3_0161 at 185.174 kb on - strand, within Shewana3_0161
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 182,202 + Shewana3_0158 0.12 -1.2 182,208 + Shewana3_0158 0.13 -1.4 182,290 - Shewana3_0158 0.21 -1.2 182,300 - Shewana3_0158 0.22 -1.8 182,484 - Shewana3_0158 0.41 -2.3 182,752 + Shewana3_0158 0.67 -0.7 182,753 - Shewana3_0158 0.68 -2.1 182,869 + Shewana3_0158 0.79 -2.5 182,919 - Shewana3_0158 0.84 -1.0 183,175 - -1.7 183,224 - -0.0 183,594 + Shewana3_0159 0.39 -1.0 183,602 - Shewana3_0159 0.40 -0.8 183,611 + Shewana3_0159 0.41 -1.2 183,634 + Shewana3_0159 0.43 -0.5 183,634 + Shewana3_0159 0.43 -0.9 183,634 + Shewana3_0159 0.43 -1.8 183,642 - Shewana3_0159 0.44 -0.9 183,674 + Shewana3_0159 0.46 -1.6 183,802 - Shewana3_0159 0.57 -0.5 183,805 + Shewana3_0159 0.57 -1.3 183,893 + Shewana3_0159 0.65 -1.2 183,893 + Shewana3_0159 0.65 -2.2 183,893 + Shewana3_0159 0.65 -1.4 183,893 + Shewana3_0159 0.65 -1.2 183,901 - Shewana3_0159 0.65 -1.4 183,921 - Shewana3_0159 0.67 -1.4 183,964 + Shewana3_0159 0.71 -2.1 184,020 - Shewana3_0159 0.75 -2.8 184,049 + Shewana3_0159 0.78 -1.6 184,057 - Shewana3_0159 0.78 -1.1 184,057 - Shewana3_0159 0.78 -0.4 184,107 + Shewana3_0159 0.83 -2.2 184,107 + Shewana3_0159 0.83 -1.1 184,115 - Shewana3_0159 0.83 -1.2 184,115 - Shewana3_0159 0.83 +0.1 184,467 - Shewana3_0160 0.32 -2.9 184,472 + Shewana3_0160 0.33 -1.5 184,472 + Shewana3_0160 0.33 -2.1 184,558 + Shewana3_0160 0.51 -0.0 184,558 + Shewana3_0160 0.51 -0.9 184,558 + Shewana3_0160 0.51 -0.9 184,558 + Shewana3_0160 0.51 -0.6 184,558 + Shewana3_0160 0.51 -0.4 184,566 - Shewana3_0160 0.53 -0.3 184,576 + Shewana3_0160 0.55 -0.5 184,627 - Shewana3_0160 0.66 -0.7 184,723 + Shewana3_0160 0.86 -0.8 184,947 - Shewana3_0161 0.19 +0.1 185,077 - Shewana3_0161 0.36 +0.5 185,108 + Shewana3_0161 0.40 -0.3 185,146 + Shewana3_0161 0.45 -0.9 185,174 - Shewana3_0161 0.48 -0.3
Or see this region's nucleotide sequence