Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0150 and Shewana3_0151 are separated by 24 nucleotides Shewana3_0151 and Shewana3_0152 overlap by 4 nucleotides
Shewana3_0150: Shewana3_0150 - general secretion pathway protein C (RefSeq), at 174,052 to 174,978
_0150
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Shewana3_0152: Shewana3_0152 - type II secretion system protein E (GspE) (RefSeq), at 177,108 to 178,673
_0152
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 174.039 kb on - strand at 174.081 kb on + strand at 174.272 kb on + strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.465 kb on + strand, within Shewana3_0150 at 174.473 kb on - strand, within Shewana3_0150 at 174.561 kb on + strand, within Shewana3_0150 at 174.564 kb on - strand, within Shewana3_0150 at 174.694 kb on + strand, within Shewana3_0150 at 174.701 kb on - strand, within Shewana3_0150 at 174.800 kb on + strand, within Shewana3_0150 at 175.055 kb on + strand at 175.103 kb on + strand at 175.169 kb on + strand at 175.208 kb on + strand at 175.208 kb on + strand at 175.216 kb on - strand, within Shewana3_0151 at 175.216 kb on - strand, within Shewana3_0151 at 175.231 kb on - strand, within Shewana3_0151 at 175.264 kb on + strand, within Shewana3_0151 at 175.272 kb on - strand, within Shewana3_0151 at 175.369 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.493 kb on - strand, within Shewana3_0151 at 175.589 kb on + strand, within Shewana3_0151 at 175.794 kb on + strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.811 kb on - strand, within Shewana3_0151 at 175.953 kb on + strand, within Shewana3_0151 at 176.039 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.290 kb on + strand, within Shewana3_0151 at 176.298 kb on - strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.477 kb on + strand, within Shewana3_0151 at 176.528 kb on - strand, within Shewana3_0151 at 176.677 kb on - strand, within Shewana3_0151 at 176.733 kb on - strand, within Shewana3_0151 at 176.734 kb on + strand, within Shewana3_0151 at 177.033 kb on - strand at 177.033 kb on - strand at 177.040 kb on + strand at 177.181 kb on + strand at 177.284 kb on + strand, within Shewana3_0152 at 177.292 kb on - strand, within Shewana3_0152 at 177.364 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.934 kb on + strand, within Shewana3_0152 at 178.087 kb on - strand, within Shewana3_0152 at 178.108 kb on + strand, within Shewana3_0152
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 174,039 - +0.0 174,081 + -0.3 174,272 + Shewana3_0150 0.24 -2.8 174,335 - Shewana3_0150 0.31 -0.9 174,335 - Shewana3_0150 0.31 -2.4 174,465 + Shewana3_0150 0.45 -1.3 174,473 - Shewana3_0150 0.45 -2.4 174,561 + Shewana3_0150 0.55 -0.7 174,564 - Shewana3_0150 0.55 -1.7 174,694 + Shewana3_0150 0.69 -0.3 174,701 - Shewana3_0150 0.70 -2.4 174,800 + Shewana3_0150 0.81 -0.3 175,055 + -1.3 175,103 + -1.1 175,169 + -3.0 175,208 + -1.1 175,208 + -2.1 175,216 - Shewana3_0151 0.10 -0.2 175,216 - Shewana3_0151 0.10 -0.5 175,231 - Shewana3_0151 0.11 -0.8 175,264 + Shewana3_0151 0.12 -2.2 175,272 - Shewana3_0151 0.13 -0.9 175,369 + Shewana3_0151 0.17 -1.8 175,407 + Shewana3_0151 0.19 -1.1 175,407 + Shewana3_0151 0.19 -1.5 175,407 + Shewana3_0151 0.19 -2.1 175,415 - Shewana3_0151 0.20 -2.3 175,415 - Shewana3_0151 0.20 -3.3 175,415 - Shewana3_0151 0.20 -1.8 175,493 - Shewana3_0151 0.23 -1.1 175,589 + Shewana3_0151 0.28 -1.5 175,794 + Shewana3_0151 0.38 -1.5 175,802 - Shewana3_0151 0.38 -0.2 175,802 - Shewana3_0151 0.38 -2.1 175,811 - Shewana3_0151 0.38 -2.2 175,953 + Shewana3_0151 0.45 -2.2 176,039 + Shewana3_0151 0.49 -1.2 176,223 + Shewana3_0151 0.58 -1.1 176,223 + Shewana3_0151 0.58 -1.0 176,223 + Shewana3_0151 0.58 -2.2 176,223 + Shewana3_0151 0.58 -0.8 176,231 - Shewana3_0151 0.58 -2.6 176,231 - Shewana3_0151 0.58 -1.8 176,290 + Shewana3_0151 0.61 -1.8 176,298 - Shewana3_0151 0.61 -0.4 176,349 + Shewana3_0151 0.64 -1.7 176,349 + Shewana3_0151 0.64 -1.5 176,349 + Shewana3_0151 0.64 -1.7 176,477 + Shewana3_0151 0.70 -0.5 176,528 - Shewana3_0151 0.72 -1.2 176,677 - Shewana3_0151 0.79 -3.0 176,733 - Shewana3_0151 0.82 -1.6 176,734 + Shewana3_0151 0.82 -0.9 177,033 - -0.5 177,033 - -1.4 177,040 + -0.1 177,181 + -1.9 177,284 + Shewana3_0152 0.11 -0.4 177,292 - Shewana3_0152 0.12 -2.5 177,364 - Shewana3_0152 0.16 -1.9 177,547 - Shewana3_0152 0.28 -0.9 177,547 - Shewana3_0152 0.28 -0.9 177,934 + Shewana3_0152 0.53 -1.1 178,087 - Shewana3_0152 0.63 -1.6 178,108 + Shewana3_0152 0.64 -2.0
Or see this region's nucleotide sequence