Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4145

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4142 and Shewana3_4143 are separated by 83 nucleotidesShewana3_4143 and Shewana3_4144 are separated by 43 nucleotidesShewana3_4144 and Shewana3_4145 are separated by 36 nucleotidesShewana3_4145 and Shewana3_4146 are separated by 175 nucleotidesShewana3_4146 and Shewana3_4147 are separated by 51 nucleotides Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471 _4142 Shewana3_4143: Shewana3_4143 - hypothetical protein (RefSeq), at 2,555 to 2,836 _4143 Shewana3_4144: Shewana3_4144 - plastocyanin domain-containing protein (RefSeq), at 2,880 to 3,239 _4144 Shewana3_4145: Shewana3_4145 - copper-translocating P-type ATPase (RefSeq), at 3,276 to 5,612 _4145 Shewana3_4146: Shewana3_4146 - GntR family transcriptional regulator (RefSeq), at 5,788 to 6,504 _4146 Shewana3_4147: Shewana3_4147 - outer membrane porin (RefSeq), at 6,556 to 7,779 _4147 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2.276 kb on - strand, within Shewana3_4142at 2.337 kb on - strand, within Shewana3_4142at 2.352 kb on - strand, within Shewana3_4142at 2.545 kb on - strandat 2.898 kb on + strandat 2.903 kb on + strandat 2.906 kb on - strandat 3.106 kb on + strand, within Shewana3_4144at 3.209 kb on + strandat 3.231 kb on - strandat 3.321 kb on - strandat 3.486 kb on - strandat 3.501 kb on + strandat 3.828 kb on - strand, within Shewana3_4145at 4.013 kb on + strand, within Shewana3_4145at 4.260 kb on + strand, within Shewana3_4145at 4.262 kb on + strand, within Shewana3_4145at 4.566 kb on - strand, within Shewana3_4145at 4.590 kb on - strand, within Shewana3_4145at 4.690 kb on + strand, within Shewana3_4145at 4.706 kb on - strand, within Shewana3_4145at 4.819 kb on + strand, within Shewana3_4145at 4.853 kb on + strand, within Shewana3_4145at 4.853 kb on + strand, within Shewana3_4145at 4.861 kb on - strand, within Shewana3_4145at 4.892 kb on + strand, within Shewana3_4145at 4.900 kb on - strand, within Shewana3_4145at 4.900 kb on - strand, within Shewana3_4145at 4.972 kb on - strand, within Shewana3_4145at 5.112 kb on + strand, within Shewana3_4145at 5.152 kb on + strand, within Shewana3_4145at 5.388 kb on - strandat 5.430 kb on + strandat 5.441 kb on - strandat 5.521 kb on + strandat 5.548 kb on - strandat 5.551 kb on - strandat 5.551 kb on - strandat 5.558 kb on - strandat 5.608 kb on + strandat 5.609 kb on + strandat 5.610 kb on + strandat 5.617 kb on - strandat 5.617 kb on - strandat 5.630 kb on - strandat 5.630 kb on - strandat 5.639 kb on - strandat 5.673 kb on - strandat 5.676 kb on + strandat 5.690 kb on + strandat 5.705 kb on - strandat 5.723 kb on + strandat 5.723 kb on + strandat 5.731 kb on - strandat 5.735 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.783 kb on + strandat 5.809 kb on - strandat 5.809 kb on - strandat 5.815 kb on + strandat 5.842 kb on + strandat 5.850 kb on - strandat 5.850 kb on - strandat 5.850 kb on - strandat 5.851 kb on + strandat 5.851 kb on + strandat 5.851 kb on + strandat 5.852 kb on + strandat 5.856 kb on + strandat 5.856 kb on + strandat 5.864 kb on - strand, within Shewana3_4146at 5.874 kb on + strand, within Shewana3_4146at 5.874 kb on + strand, within Shewana3_4146at 5.874 kb on + strand, within Shewana3_4146at 5.874 kb on + strand, within Shewana3_4146at 5.883 kb on - strand, within Shewana3_4146at 5.883 kb on - strand, within Shewana3_4146at 5.888 kb on + strand, within Shewana3_4146at 5.888 kb on + strand, within Shewana3_4146at 5.888 kb on + strand, within Shewana3_4146at 5.888 kb on + strand, within Shewana3_4146at 5.896 kb on - strand, within Shewana3_4146at 5.896 kb on - strand, within Shewana3_4146at 5.898 kb on + strand, within Shewana3_4146at 5.907 kb on - strand, within Shewana3_4146at 5.907 kb on - strand, within Shewana3_4146at 5.907 kb on - strand, within Shewana3_4146at 5.907 kb on - strand, within Shewana3_4146at 5.909 kb on + strand, within Shewana3_4146at 5.911 kb on - strand, within Shewana3_4146at 5.917 kb on - strand, within Shewana3_4146at 5.917 kb on - strand, within Shewana3_4146at 5.917 kb on - strand, within Shewana3_4146at 5.917 kb on - strand, within Shewana3_4146at 5.917 kb on - strand, within Shewana3_4146at 6.003 kb on + strand, within Shewana3_4146at 6.014 kb on + strand, within Shewana3_4146at 6.021 kb on - strand, within Shewana3_4146at 6.022 kb on - strand, within Shewana3_4146at 6.022 kb on - strand, within Shewana3_4146at 6.022 kb on - strand, within Shewana3_4146at 6.022 kb on - strand, within Shewana3_4146at 6.029 kb on + strand, within Shewana3_4146at 6.029 kb on + strand, within Shewana3_4146at 6.037 kb on - strand, within Shewana3_4146at 6.072 kb on + strand, within Shewana3_4146at 6.080 kb on + strand, within Shewana3_4146at 6.085 kb on + strand, within Shewana3_4146at 6.088 kb on - strand, within Shewana3_4146at 6.093 kb on - strand, within Shewana3_4146at 6.093 kb on - strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.095 kb on + strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.102 kb on - strand, within Shewana3_4146at 6.103 kb on - strand, within Shewana3_4146at 6.103 kb on - strand, within Shewana3_4146at 6.117 kb on - strand, within Shewana3_4146at 6.126 kb on + strand, within Shewana3_4146at 6.127 kb on - strand, within Shewana3_4146at 6.129 kb on + strand, within Shewana3_4146at 6.138 kb on - strand, within Shewana3_4146at 6.164 kb on + strand, within Shewana3_4146at 6.164 kb on + strand, within Shewana3_4146at 6.164 kb on + strand, within Shewana3_4146at 6.172 kb on - strand, within Shewana3_4146at 6.172 kb on - strand, within Shewana3_4146at 6.172 kb on - strand, within Shewana3_4146at 6.174 kb on + strand, within Shewana3_4146at 6.174 kb on + strand, within Shewana3_4146at 6.174 kb on + strand, within Shewana3_4146at 6.177 kb on - strand, within Shewana3_4146at 6.182 kb on - strand, within Shewana3_4146at 6.182 kb on - strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.188 kb on + strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.196 kb on - strand, within Shewana3_4146at 6.206 kb on - strand, within Shewana3_4146at 6.206 kb on - strand, within Shewana3_4146at 6.275 kb on - strand, within Shewana3_4146at 6.276 kb on + strand, within Shewana3_4146at 6.294 kb on + strand, within Shewana3_4146at 6.294 kb on + strand, within Shewana3_4146at 6.297 kb on - strand, within Shewana3_4146at 6.299 kb on + strand, within Shewana3_4146at 6.299 kb on + strand, within Shewana3_4146at 6.299 kb on + strand, within Shewana3_4146at 6.307 kb on - strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.309 kb on + strand, within Shewana3_4146at 6.312 kb on - strand, within Shewana3_4146at 6.317 kb on - strand, within Shewana3_4146at 6.317 kb on - strand, within Shewana3_4146at 6.317 kb on - strand, within Shewana3_4146at 6.345 kb on + strand, within Shewana3_4146at 6.346 kb on + strand, within Shewana3_4146at 6.354 kb on + strand, within Shewana3_4146at 6.356 kb on + strand, within Shewana3_4146at 6.359 kb on + strand, within Shewana3_4146at 6.362 kb on - strand, within Shewana3_4146at 6.364 kb on - strand, within Shewana3_4146at 6.364 kb on - strand, within Shewana3_4146at 6.364 kb on - strand, within Shewana3_4146at 6.364 kb on - strand, within Shewana3_4146at 6.413 kb on + strand, within Shewana3_4146at 6.413 kb on + strand, within Shewana3_4146at 6.421 kb on - strand, within Shewana3_4146at 6.421 kb on - strand, within Shewana3_4146at 6.467 kb on + strandat 6.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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2,276 - Shewana3_4142 0.80 -0.3
2,337 - Shewana3_4142 0.86 +0.2
2,352 - Shewana3_4142 0.88 +0.1
2,545 - +3.3
2,898 + -0.1
2,903 + +1.0
2,906 - +0.2
3,106 + Shewana3_4144 0.63 -2.6
3,209 + -1.3
3,231 - -0.1
3,321 - +0.8
3,486 - +0.7
3,501 + -0.3
3,828 - Shewana3_4145 0.24 -0.4
4,013 + Shewana3_4145 0.32 -1.8
4,260 + Shewana3_4145 0.42 +1.7
4,262 + Shewana3_4145 0.42 +0.0
4,566 - Shewana3_4145 0.55 +0.1
4,590 - Shewana3_4145 0.56 -0.6
4,690 + Shewana3_4145 0.61 -1.1
4,706 - Shewana3_4145 0.61 -0.4
4,819 + Shewana3_4145 0.66 -0.3
4,853 + Shewana3_4145 0.67 +0.7
4,853 + Shewana3_4145 0.67 +2.3
4,861 - Shewana3_4145 0.68 -1.6
4,892 + Shewana3_4145 0.69 +1.1
4,900 - Shewana3_4145 0.69 -0.2
4,900 - Shewana3_4145 0.69 -0.2
4,972 - Shewana3_4145 0.73 +0.1
5,112 + Shewana3_4145 0.79 -0.9
5,152 + Shewana3_4145 0.80 +1.7
5,388 - -0.5
5,430 + +0.7
5,441 - -0.1
5,521 + +1.7
5,548 - +0.3
5,551 - -0.3
5,551 - +0.4
5,558 - +0.1
5,608 + +2.0
5,609 + +0.7
5,610 + -0.3
5,617 - +0.1
5,617 - +0.2
5,630 - -1.4
5,630 - +0.2
5,639 - +0.2
5,673 - -2.7
5,676 + -0.3
5,690 + +1.1
5,705 - -0.1
5,723 + +0.7
5,723 + +0.7
5,731 - +0.2
5,735 - -0.1
5,751 - -0.9
5,751 - +0.1
5,751 - -0.1
5,751 - -0.5
5,751 - -0.4
5,751 - +0.3
5,751 - -0.4
5,783 + -1.6
5,809 - -0.1
5,809 - +0.1
5,815 + -1.3
5,842 + -0.3
5,850 - -0.1
5,850 - -0.1
5,850 - -0.0
5,851 + -0.5
5,851 + +0.7
5,851 + +0.7
5,852 + +0.7
5,856 + +0.7
5,856 + +0.7
5,864 - Shewana3_4146 0.11 -0.3
5,874 + Shewana3_4146 0.12 +0.7
5,874 + Shewana3_4146 0.12 +0.7
5,874 + Shewana3_4146 0.12 +0.7
5,874 + Shewana3_4146 0.12 -1.3
5,883 - Shewana3_4146 0.13 -0.4
5,883 - Shewana3_4146 0.13 -0.0
5,888 + Shewana3_4146 0.14 +0.2
5,888 + Shewana3_4146 0.14 +0.7
5,888 + Shewana3_4146 0.14 +0.1
5,888 + Shewana3_4146 0.14 +0.7
5,896 - Shewana3_4146 0.15 +0.0
5,896 - Shewana3_4146 0.15 -0.2
5,898 + Shewana3_4146 0.15 +0.1
5,907 - Shewana3_4146 0.17 -0.4
5,907 - Shewana3_4146 0.17 -0.2
5,907 - Shewana3_4146 0.17 -1.3
5,907 - Shewana3_4146 0.17 -0.1
5,909 + Shewana3_4146 0.17 -0.2
5,911 - Shewana3_4146 0.17 -0.7
5,917 - Shewana3_4146 0.18 +0.5
5,917 - Shewana3_4146 0.18 -0.3
5,917 - Shewana3_4146 0.18 +0.1
5,917 - Shewana3_4146 0.18 +0.4
5,917 - Shewana3_4146 0.18 -0.3
6,003 + Shewana3_4146 0.30 -0.9
6,014 + Shewana3_4146 0.32 -1.3
6,021 - Shewana3_4146 0.32 +0.1
6,022 - Shewana3_4146 0.33 -0.4
6,022 - Shewana3_4146 0.33 -0.0
6,022 - Shewana3_4146 0.33 -0.3
6,022 - Shewana3_4146 0.33 -0.1
6,029 + Shewana3_4146 0.34 -0.3
6,029 + Shewana3_4146 0.34 +1.3
6,037 - Shewana3_4146 0.35 -0.4
6,072 + Shewana3_4146 0.40 +0.7
6,080 + Shewana3_4146 0.41 -0.0
6,085 + Shewana3_4146 0.41 +0.4
6,088 - Shewana3_4146 0.42 +0.2
6,093 - Shewana3_4146 0.43 +0.1
6,093 - Shewana3_4146 0.43 +0.1
6,095 + Shewana3_4146 0.43 +0.7
6,095 + Shewana3_4146 0.43 +0.7
6,095 + Shewana3_4146 0.43 +0.4
6,095 + Shewana3_4146 0.43 +0.2
6,095 + Shewana3_4146 0.43 -0.6
6,095 + Shewana3_4146 0.43 +0.7
6,095 + Shewana3_4146 0.43 +0.7
6,102 - Shewana3_4146 0.44 -0.5
6,102 - Shewana3_4146 0.44 -0.7
6,102 - Shewana3_4146 0.44 -0.4
6,102 - Shewana3_4146 0.44 -0.8
6,102 - Shewana3_4146 0.44 +0.4
6,102 - Shewana3_4146 0.44 -0.2
6,102 - Shewana3_4146 0.44 -0.2
6,102 - Shewana3_4146 0.44 -0.1
6,102 - Shewana3_4146 0.44 +0.0
6,102 - Shewana3_4146 0.44 +0.1
6,102 - Shewana3_4146 0.44 -0.1
6,102 - Shewana3_4146 0.44 -0.5
6,102 - Shewana3_4146 0.44 -0.1
6,102 - Shewana3_4146 0.44 -0.3
6,103 - Shewana3_4146 0.44 -0.6
6,103 - Shewana3_4146 0.44 -0.1
6,117 - Shewana3_4146 0.46 -0.1
6,126 + Shewana3_4146 0.47 +0.3
6,127 - Shewana3_4146 0.47 +0.1
6,129 + Shewana3_4146 0.48 -0.3
6,138 - Shewana3_4146 0.49 -0.1
6,164 + Shewana3_4146 0.52 +0.7
6,164 + Shewana3_4146 0.52 +1.1
6,164 + Shewana3_4146 0.52 +0.6
6,172 - Shewana3_4146 0.54 -0.8
6,172 - Shewana3_4146 0.54 +0.5
6,172 - Shewana3_4146 0.54 +0.2
6,174 + Shewana3_4146 0.54 +0.7
6,174 + Shewana3_4146 0.54 +0.7
6,174 + Shewana3_4146 0.54 -0.7
6,177 - Shewana3_4146 0.54 -0.1
6,182 - Shewana3_4146 0.55 -0.2
6,182 - Shewana3_4146 0.55 -1.8
6,188 + Shewana3_4146 0.56 +0.7
6,188 + Shewana3_4146 0.56 +0.3
6,188 + Shewana3_4146 0.56 +0.7
6,188 + Shewana3_4146 0.56 +0.7
6,188 + Shewana3_4146 0.56 +0.1
6,188 + Shewana3_4146 0.56 +0.7
6,188 + Shewana3_4146 0.56 +0.7
6,188 + Shewana3_4146 0.56 +2.3
6,196 - Shewana3_4146 0.57 -0.0
6,196 - Shewana3_4146 0.57 -0.2
6,196 - Shewana3_4146 0.57 -0.1
6,196 - Shewana3_4146 0.57 -0.3
6,196 - Shewana3_4146 0.57 -0.3
6,196 - Shewana3_4146 0.57 -0.3
6,196 - Shewana3_4146 0.57 -0.1
6,196 - Shewana3_4146 0.57 -0.3
6,196 - Shewana3_4146 0.57 -0.0
6,196 - Shewana3_4146 0.57 +0.2
6,196 - Shewana3_4146 0.57 -0.7
6,196 - Shewana3_4146 0.57 +0.2
6,196 - Shewana3_4146 0.57 +1.0
6,206 - Shewana3_4146 0.58 -0.2
6,206 - Shewana3_4146 0.58 -0.3
6,275 - Shewana3_4146 0.68 -0.1
6,276 + Shewana3_4146 0.68 -0.3
6,294 + Shewana3_4146 0.71 +0.1
6,294 + Shewana3_4146 0.71 -0.3
6,297 - Shewana3_4146 0.71 -0.3
6,299 + Shewana3_4146 0.71 +0.7
6,299 + Shewana3_4146 0.71 +1.1
6,299 + Shewana3_4146 0.71 -0.3
6,307 - Shewana3_4146 0.72 -0.1
6,309 + Shewana3_4146 0.73 +0.7
6,309 + Shewana3_4146 0.73 -0.0
6,309 + Shewana3_4146 0.73 -0.3
6,309 + Shewana3_4146 0.73 -0.9
6,309 + Shewana3_4146 0.73 +1.7
6,309 + Shewana3_4146 0.73 +0.7
6,309 + Shewana3_4146 0.73 +0.7
6,312 - Shewana3_4146 0.73 +0.1
6,317 - Shewana3_4146 0.74 -0.1
6,317 - Shewana3_4146 0.74 -0.2
6,317 - Shewana3_4146 0.74 -0.3
6,345 + Shewana3_4146 0.78 +1.7
6,346 + Shewana3_4146 0.78 -0.3
6,354 + Shewana3_4146 0.79 -0.5
6,356 + Shewana3_4146 0.79 -0.5
6,359 + Shewana3_4146 0.80 -0.1
6,362 - Shewana3_4146 0.80 -0.2
6,364 - Shewana3_4146 0.80 +0.0
6,364 - Shewana3_4146 0.80 +0.2
6,364 - Shewana3_4146 0.80 -0.4
6,364 - Shewana3_4146 0.80 -0.5
6,413 + Shewana3_4146 0.87 +0.4
6,413 + Shewana3_4146 0.87 -0.9
6,421 - Shewana3_4146 0.88 +0.3
6,421 - Shewana3_4146 0.88 +0.3
6,467 + +1.2
6,467 - -0.2

Or see this region's nucleotide sequence