Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5918 and Pf1N1B4_5919 overlap by 36 nucleotides Pf1N1B4_5919 and Pf1N1B4_5920 are separated by 186 nucleotides
Pf1N1B4_5918 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 359,549 to 362,353
_5918
Pf1N1B4_5919 - Signal transduction response regulator / Tetratricopeptide repeat-containing protein, at 362,318 to 363,796
_5919
Pf1N1B4_5920 - Transcriptional regulator, AraC family, at 363,983 to 364,933
_5920
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.411 kb on + strand, within Pf1N1B4_5918 at 361.411 kb on + strand, within Pf1N1B4_5918 at 361.411 kb on + strand at 361.411 kb on + strand, within Pf1N1B4_5918 at 361.412 kb on - strand, within Pf1N1B4_5918 at 361.412 kb on - strand, within Pf1N1B4_5918 at 361.412 kb on - strand, within Pf1N1B4_5918 at 361.412 kb on - strand, within Pf1N1B4_5918 at 361.412 kb on - strand, within Pf1N1B4_5918 at 361.412 kb on - strand at 361.617 kb on - strand at 361.635 kb on - strand, within Pf1N1B4_5918 at 361.683 kb on + strand, within Pf1N1B4_5918 at 361.769 kb on + strand, within Pf1N1B4_5918 at 361.769 kb on + strand, within Pf1N1B4_5918 at 361.805 kb on + strand, within Pf1N1B4_5918 at 361.805 kb on + strand, within Pf1N1B4_5918 at 361.805 kb on + strand at 361.805 kb on + strand, within Pf1N1B4_5918 at 361.886 kb on + strand, within Pf1N1B4_5918 at 361.886 kb on + strand, within Pf1N1B4_5918 at 361.887 kb on - strand, within Pf1N1B4_5918 at 361.887 kb on - strand, within Pf1N1B4_5918 at 361.887 kb on - strand at 362.264 kb on + strand at 362.265 kb on - strand at 362.290 kb on + strand at 362.440 kb on - strand at 362.440 kb on - strand at 362.440 kb on - strand at 362.440 kb on - strand at 362.440 kb on - strand at 362.444 kb on - strand at 362.526 kb on - strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.658 kb on + strand, within Pf1N1B4_5919 at 362.659 kb on - strand, within Pf1N1B4_5919 at 362.659 kb on - strand, within Pf1N1B4_5919 at 362.925 kb on + strand, within Pf1N1B4_5919 at 362.949 kb on + strand, within Pf1N1B4_5919 at 362.949 kb on + strand at 362.949 kb on + strand at 362.950 kb on - strand, within Pf1N1B4_5919 at 362.950 kb on - strand at 362.952 kb on - strand, within Pf1N1B4_5919 at 363.290 kb on - strand, within Pf1N1B4_5919 at 363.290 kb on - strand at 363.502 kb on + strand, within Pf1N1B4_5919 at 363.513 kb on + strand, within Pf1N1B4_5919 at 363.514 kb on - strand, within Pf1N1B4_5919 at 363.670 kb on + strand at 363.776 kb on + strand at 363.777 kb on - strand at 364.207 kb on + strand, within Pf1N1B4_5920 at 364.488 kb on + strand at 364.489 kb on - strand, within Pf1N1B4_5920 at 364.489 kb on - strand at 364.489 kb on - strand, within Pf1N1B4_5920 at 364.545 kb on + strand, within Pf1N1B4_5920 at 364.546 kb on - strand, within Pf1N1B4_5920 at 364.689 kb on + strand, within Pf1N1B4_5920 at 364.689 kb on + strand, within Pf1N1B4_5920 at 364.690 kb on - strand, within Pf1N1B4_5920
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 361,411 + Pf1N1B4_5918 0.66 -1.5 361,411 + Pf1N1B4_5918 0.66 +0.2 361,411 + +1.3 361,411 + Pf1N1B4_5918 0.66 +0.4 361,412 - Pf1N1B4_5918 0.66 -0.3 361,412 - Pf1N1B4_5918 0.66 -0.1 361,412 - Pf1N1B4_5918 0.66 -1.3 361,412 - Pf1N1B4_5918 0.66 +1.0 361,412 - Pf1N1B4_5918 0.66 +1.7 361,412 - +0.7 361,617 - -0.9 361,635 - Pf1N1B4_5918 0.74 +0.1 361,683 + Pf1N1B4_5918 0.76 +0.5 361,769 + Pf1N1B4_5918 0.79 -0.0 361,769 + Pf1N1B4_5918 0.79 -1.1 361,805 + Pf1N1B4_5918 0.80 -0.7 361,805 + Pf1N1B4_5918 0.80 +0.1 361,805 + -1.3 361,805 + Pf1N1B4_5918 0.80 -0.3 361,886 + Pf1N1B4_5918 0.83 +0.2 361,886 + Pf1N1B4_5918 0.83 -0.3 361,887 - Pf1N1B4_5918 0.83 +1.5 361,887 - Pf1N1B4_5918 0.83 -1.6 361,887 - +1.3 362,264 + -0.5 362,265 - -1.9 362,290 + -0.3 362,440 - -0.9 362,440 - -0.3 362,440 - +0.7 362,440 - +0.1 362,440 - +0.9 362,444 - +0.7 362,526 - Pf1N1B4_5919 0.14 -1.3 362,658 + Pf1N1B4_5919 0.23 +1.4 362,658 + Pf1N1B4_5919 0.23 -1.9 362,658 + Pf1N1B4_5919 0.23 +1.0 362,658 + Pf1N1B4_5919 0.23 +1.7 362,658 + Pf1N1B4_5919 0.23 -0.7 362,658 + Pf1N1B4_5919 0.23 +0.1 362,658 + Pf1N1B4_5919 0.23 +0.4 362,659 - Pf1N1B4_5919 0.23 +0.2 362,659 - Pf1N1B4_5919 0.23 +1.0 362,925 + Pf1N1B4_5919 0.41 -1.9 362,949 + Pf1N1B4_5919 0.43 -0.3 362,949 + -1.9 362,949 + +0.3 362,950 - Pf1N1B4_5919 0.43 -0.7 362,950 - -0.3 362,952 - Pf1N1B4_5919 0.43 +1.7 363,290 - Pf1N1B4_5919 0.66 +0.1 363,290 - -0.3 363,502 + Pf1N1B4_5919 0.80 +1.7 363,513 + Pf1N1B4_5919 0.81 +0.4 363,514 - Pf1N1B4_5919 0.81 +1.3 363,670 + +1.3 363,776 + -0.3 363,777 - +1.7 364,207 + Pf1N1B4_5920 0.24 +2.3 364,488 + +1.3 364,489 - Pf1N1B4_5920 0.53 +1.3 364,489 - -0.3 364,489 - Pf1N1B4_5920 0.53 -1.0 364,545 + Pf1N1B4_5920 0.59 +1.5 364,546 - Pf1N1B4_5920 0.59 -1.9 364,689 + Pf1N1B4_5920 0.74 +0.5 364,689 + Pf1N1B4_5920 0.74 +0.3 364,690 - Pf1N1B4_5920 0.74 -0.9
Or see this region's nucleotide sequence