Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5382

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5381 and Pf1N1B4_5382 are separated by 486 nucleotidesPf1N1B4_5382 and Pf1N1B4_5383 are separated by 853 nucleotides Pf1N1B4_5381 - hypothetical protein, at 114,183 to 114,464 _5381 Pf1N1B4_5382 - hypothetical protein, at 114,951 to 115,394 _5382 Pf1N1B4_5383 - hypothetical protein, at 116,248 to 116,568 _5383 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 114.012 kb on + strandat 114.012 kb on + strandat 114.012 kb on + strandat 114.012 kb on + strandat 114.012 kb on + strandat 114.012 kb on + strandat 114.012 kb on + strandat 114.013 kb on - strandat 114.013 kb on - strandat 114.013 kb on - strandat 114.035 kb on + strandat 114.101 kb on + strandat 114.109 kb on - strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.143 kb on + strandat 114.144 kb on - strandat 114.144 kb on - strandat 114.144 kb on - strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.147 kb on + strandat 114.148 kb on - strandat 114.148 kb on - strandat 114.148 kb on - strandat 114.148 kb on - strandat 114.163 kb on + strandat 114.163 kb on + strandat 114.163 kb on + strandat 114.164 kb on - strandat 114.181 kb on + strandat 114.181 kb on + strandat 114.281 kb on + strand, within Pf1N1B4_5381at 114.286 kb on + strand, within Pf1N1B4_5381at 114.286 kb on + strand, within Pf1N1B4_5381at 114.320 kb on + strand, within Pf1N1B4_5381at 114.321 kb on - strand, within Pf1N1B4_5381at 114.343 kb on + strandat 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.343 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.400 kb on + strand, within Pf1N1B4_5381at 114.401 kb on - strandat 114.404 kb on + strand, within Pf1N1B4_5381at 114.404 kb on + strand, within Pf1N1B4_5381at 114.404 kb on + strand, within Pf1N1B4_5381at 114.404 kb on + strand, within Pf1N1B4_5381at 114.404 kb on + strand, within Pf1N1B4_5381at 114.404 kb on + strand, within Pf1N1B4_5381at 114.404 kb on + strand, within Pf1N1B4_5381at 114.405 kb on - strand, within Pf1N1B4_5381at 114.405 kb on - strand, within Pf1N1B4_5381at 114.434 kb on + strand, within Pf1N1B4_5381at 114.434 kb on + strand, within Pf1N1B4_5381at 114.532 kb on + strandat 114.620 kb on + strandat 114.620 kb on + strandat 114.637 kb on - strandat 114.684 kb on + strandat 114.797 kb on + strandat 114.797 kb on + strandat 114.994 kb on + strandat 114.995 kb on - strandat 114.995 kb on - strandat 115.027 kb on + strand, within Pf1N1B4_5382at 115.028 kb on - strand, within Pf1N1B4_5382at 115.210 kb on + strand, within Pf1N1B4_5382at 115.211 kb on - strand, within Pf1N1B4_5382at 115.211 kb on - strand, within Pf1N1B4_5382at 115.298 kb on + strand, within Pf1N1B4_5382at 115.299 kb on - strand, within Pf1N1B4_5382at 115.299 kb on - strand, within Pf1N1B4_5382at 115.406 kb on + strandat 115.406 kb on + strandat 115.415 kb on + strandat 115.415 kb on + strandat 115.415 kb on + strandat 115.416 kb on - strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.434 kb on + strandat 115.435 kb on - strandat 115.478 kb on + strandat 115.478 kb on + strandat 115.479 kb on - strandat 115.547 kb on + strandat 115.547 kb on + strandat 115.547 kb on + strandat 115.548 kb on - strandat 115.548 kb on - strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.645 kb on + strandat 115.646 kb on - strandat 115.646 kb on - strandat 115.646 kb on - strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.690 kb on - strandat 115.690 kb on - strandat 115.690 kb on - strandat 115.690 kb on - strandat 115.723 kb on + strandat 115.723 kb on + strandat 115.723 kb on + strandat 115.723 kb on + strandat 115.723 kb on + strandat 115.723 kb on + strandat 115.723 kb on + strandat 115.724 kb on - strandat 115.736 kb on + strandat 115.736 kb on + strandat 115.882 kb on - strandat 115.902 kb on + strandat 115.902 kb on + strandat 115.902 kb on + strandat 115.948 kb on + strandat 115.948 kb on + strandat 115.952 kb on + strandat 115.952 kb on + strandat 115.952 kb on + strandat 115.952 kb on + strandat 115.952 kb on + strandat 115.952 kb on + strandat 115.952 kb on + strandat 115.953 kb on - strandat 115.976 kb on + strandat 115.976 kb on + strandat 115.976 kb on + strandat 115.976 kb on + strandat 115.989 kb on + strandat 115.989 kb on + strandat 116.000 kb on + strandat 116.000 kb on + strandat 116.000 kb on + strandat 116.001 kb on - strandat 116.036 kb on + strandat 116.036 kb on + strandat 116.036 kb on + strandat 116.036 kb on + strandat 116.037 kb on - strandat 116.037 kb on - strandat 116.093 kb on + strandat 116.093 kb on + strandat 116.093 kb on + strandat 116.093 kb on + strandat 116.093 kb on + strandat 116.093 kb on + strandat 116.094 kb on - strandat 116.095 kb on + strandat 116.095 kb on + strandat 116.095 kb on + strandat 116.095 kb on + strandat 116.095 kb on + strandat 116.095 kb on + strandat 116.165 kb on - strandat 116.188 kb on + strandat 116.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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114,012 + +1.1
114,012 + -1.5
114,012 + -0.4
114,012 + +0.5
114,012 + +0.3
114,012 + -1.2
114,012 + +0.8
114,013 - +0.1
114,013 - +0.1
114,013 - +0.1
114,035 + +0.1
114,101 + -0.9
114,109 - +0.1
114,143 + +0.8
114,143 + -0.4
114,143 + +1.9
114,143 + +0.5
114,143 + -1.5
114,143 + -0.3
114,143 + +0.3
114,143 + -0.9
114,143 + -0.9
114,143 + -0.2
114,143 + +1.2
114,143 + -0.8
114,143 + -2.3
114,143 + -0.3
114,143 + +1.6
114,143 + +2.2
114,143 + +0.8
114,144 - -2.1
114,144 - +0.6
114,144 - +1.6
114,147 + +1.3
114,147 + -0.5
114,147 + +0.6
114,147 + +1.6
114,147 + +1.4
114,147 + +0.1
114,147 + -0.3
114,147 + -1.3
114,147 + +1.9
114,147 + -0.3
114,147 + -0.5
114,148 - +0.3
114,148 - -0.4
114,148 - -0.6
114,148 - +0.6
114,163 + +0.1
114,163 + -0.1
114,163 + +0.7
114,164 - +0.3
114,181 + +0.1
114,181 + -0.3
114,281 + Pf1N1B4_5381 0.35 -0.0
114,286 + Pf1N1B4_5381 0.37 +0.1
114,286 + Pf1N1B4_5381 0.37 +0.1
114,320 + Pf1N1B4_5381 0.49 +0.1
114,321 - Pf1N1B4_5381 0.49 -1.7
114,343 + +1.4
114,343 + Pf1N1B4_5381 0.57 +0.4
114,343 + Pf1N1B4_5381 0.57 +0.1
114,343 + Pf1N1B4_5381 0.57 -0.2
114,343 + Pf1N1B4_5381 0.57 +1.1
114,343 + Pf1N1B4_5381 0.57 +2.6
114,343 + Pf1N1B4_5381 0.57 +0.6
114,343 + Pf1N1B4_5381 0.57 +0.8
114,343 + Pf1N1B4_5381 0.57 +1.0
114,400 + Pf1N1B4_5381 0.77 +2.1
114,400 + Pf1N1B4_5381 0.77 -0.7
114,400 + Pf1N1B4_5381 0.77 -0.5
114,400 + Pf1N1B4_5381 0.77 -1.4
114,400 + Pf1N1B4_5381 0.77 -0.9
114,400 + Pf1N1B4_5381 0.77 +0.1
114,400 + Pf1N1B4_5381 0.77 +0.5
114,400 + Pf1N1B4_5381 0.77 +0.6
114,401 - +0.1
114,404 + Pf1N1B4_5381 0.78 -0.3
114,404 + Pf1N1B4_5381 0.78 +0.3
114,404 + Pf1N1B4_5381 0.78 -0.3
114,404 + Pf1N1B4_5381 0.78 -2.5
114,404 + Pf1N1B4_5381 0.78 +0.4
114,404 + Pf1N1B4_5381 0.78 -0.2
114,404 + Pf1N1B4_5381 0.78 +0.5
114,405 - Pf1N1B4_5381 0.79 -1.9
114,405 - Pf1N1B4_5381 0.79 -1.5
114,434 + Pf1N1B4_5381 0.89 -0.3
114,434 + Pf1N1B4_5381 0.89 +0.9
114,532 + +0.3
114,620 + +0.1
114,620 + +1.1
114,637 - +0.6
114,684 + -0.6
114,797 + +0.1
114,797 + +0.5
114,994 + -1.9
114,995 - +0.6
114,995 - +0.2
115,027 + Pf1N1B4_5382 0.17 +0.1
115,028 - Pf1N1B4_5382 0.17 +1.6
115,210 + Pf1N1B4_5382 0.58 +0.4
115,211 - Pf1N1B4_5382 0.59 +0.6
115,211 - Pf1N1B4_5382 0.59 -0.5
115,298 + Pf1N1B4_5382 0.78 +1.6
115,299 - Pf1N1B4_5382 0.78 +0.1
115,299 - Pf1N1B4_5382 0.78 +0.4
115,406 + +1.8
115,406 + +1.2
115,415 + +0.1
115,415 + +0.7
115,415 + +1.8
115,416 - +0.1
115,434 + +2.0
115,434 + +0.4
115,434 + +1.6
115,434 + +1.6
115,434 + +1.2
115,434 + -0.9
115,434 + +1.3
115,434 + +2.4
115,434 + +1.3
115,435 - -0.5
115,478 + +1.6
115,478 + +1.2
115,479 - -0.8
115,547 + +0.5
115,547 + -0.1
115,547 + +2.1
115,548 - -0.4
115,548 - -0.5
115,645 + +1.2
115,645 + +1.2
115,645 + +0.1
115,645 + +1.6
115,645 + +1.3
115,645 + +0.8
115,645 + +1.1
115,645 + +1.5
115,645 + +0.6
115,645 + +0.5
115,645 + +0.8
115,645 + +1.4
115,645 + +0.6
115,645 + +1.1
115,646 - +0.1
115,646 - -0.5
115,646 - +0.1
115,689 + +1.1
115,689 + +1.2
115,689 + -0.1
115,689 + +0.4
115,689 + +1.3
115,689 + +1.1
115,689 + +1.1
115,689 + +0.4
115,689 + +2.1
115,690 - -0.9
115,690 - -0.2
115,690 - +0.8
115,690 - +1.6
115,723 + +1.0
115,723 + +0.7
115,723 + +0.7
115,723 + +0.5
115,723 + +0.7
115,723 + +0.3
115,723 + +1.5
115,724 - +0.6
115,736 + +1.3
115,736 + +1.1
115,882 - -0.5
115,902 + +1.6
115,902 + +0.6
115,902 + +0.8
115,948 + +0.1
115,948 + +0.7
115,952 + +0.5
115,952 + +1.1
115,952 + +0.3
115,952 + +2.9
115,952 + +1.4
115,952 + +0.9
115,952 + +1.2
115,953 - -0.7
115,976 + +0.8
115,976 + +1.9
115,976 + -0.4
115,976 + +1.1
115,989 + -0.0
115,989 + +1.1
116,000 + +1.1
116,000 + -0.2
116,000 + +1.0
116,001 - +0.6
116,036 + -2.8
116,036 + +0.6
116,036 + +1.4
116,036 + +1.1
116,037 - -0.4
116,037 - -0.4
116,093 + +0.9
116,093 + +0.1
116,093 + +0.8
116,093 + +0.9
116,093 + +0.6
116,093 + +0.4
116,094 - -0.7
116,095 + +1.0
116,095 + +0.5
116,095 + +1.1
116,095 + +1.4
116,095 + +0.8
116,095 + +1.1
116,165 - -1.3
116,188 + +1.1
116,208 + +1.3

Or see this region's nucleotide sequence