Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5078 and Pf1N1B4_5079 are separated by 509 nucleotides Pf1N1B4_5079 and Pf1N1B4_5080 are separated by 148 nucleotides
Pf1N1B4_5078 - Transcriptional regulator PhnF, at 5,624,016 to 5,624,720
_5078
Pf1N1B4_5079 - Ferrichrome-iron receptor, at 5,625,230 to 5,627,326
_5079
Pf1N1B4_5080 - Ferrichrome-iron receptor, at 5,627,475 to 5,629,529
_5080
Position (kb) 5625
5626
5627
5628 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5624.775 kb on - strand at 5624.839 kb on - strand at 5625.205 kb on - strand at 5625.207 kb on - strand at 5625.232 kb on - strand at 5625.241 kb on - strand at 5625.241 kb on - strand at 5625.286 kb on - strand at 5625.372 kb on + strand at 5625.373 kb on - strand at 5625.399 kb on + strand at 5625.399 kb on + strand at 5625.399 kb on + strand at 5625.399 kb on + strand at 5625.400 kb on - strand at 5625.400 kb on - strand at 5625.400 kb on - strand at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.454 kb on - strand at 5625.454 kb on - strand, within Pf1N1B4_5079 at 5625.454 kb on - strand, within Pf1N1B4_5079 at 5625.454 kb on - strand, within Pf1N1B4_5079 at 5625.748 kb on - strand, within Pf1N1B4_5079 at 5625.919 kb on - strand at 5625.993 kb on + strand, within Pf1N1B4_5079 at 5626.080 kb on + strand, within Pf1N1B4_5079 at 5626.080 kb on + strand at 5626.081 kb on - strand, within Pf1N1B4_5079 at 5626.213 kb on - strand, within Pf1N1B4_5079 at 5626.218 kb on + strand, within Pf1N1B4_5079 at 5626.218 kb on + strand at 5626.218 kb on + strand, within Pf1N1B4_5079 at 5626.227 kb on + strand, within Pf1N1B4_5079 at 5626.615 kb on + strand, within Pf1N1B4_5079 at 5626.662 kb on + strand, within Pf1N1B4_5079 at 5626.881 kb on + strand, within Pf1N1B4_5079 at 5626.881 kb on + strand, within Pf1N1B4_5079 at 5626.882 kb on - strand, within Pf1N1B4_5079 at 5626.928 kb on - strand, within Pf1N1B4_5079 at 5627.258 kb on + strand at 5627.259 kb on - strand at 5627.360 kb on - strand at 5627.360 kb on - strand at 5627.560 kb on + strand at 5627.657 kb on - strand at 5627.708 kb on - strand, within Pf1N1B4_5080 at 5627.868 kb on + strand, within Pf1N1B4_5080 at 5628.043 kb on + strand, within Pf1N1B4_5080 at 5628.062 kb on - strand, within Pf1N1B4_5080 at 5628.145 kb on + strand, within Pf1N1B4_5080 at 5628.146 kb on - strand, within Pf1N1B4_5080 at 5628.146 kb on - strand, within Pf1N1B4_5080 at 5628.172 kb on + strand, within Pf1N1B4_5080 at 5628.229 kb on + strand at 5628.230 kb on - strand, within Pf1N1B4_5080 at 5628.257 kb on - strand, within Pf1N1B4_5080
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 5,624,775 - +1.1 5,624,839 - +0.1 5,625,205 - -0.4 5,625,207 - -0.9 5,625,232 - +0.8 5,625,241 - -0.4 5,625,241 - -0.4 5,625,286 - +0.7 5,625,372 + -0.4 5,625,373 - -0.2 5,625,399 + -1.4 5,625,399 + -1.0 5,625,399 + -1.4 5,625,399 + -0.3 5,625,400 - -0.9 5,625,400 - +0.1 5,625,400 - -0.7 5,625,453 + Pf1N1B4_5079 0.11 +0.1 5,625,453 + Pf1N1B4_5079 0.11 -0.8 5,625,453 + Pf1N1B4_5079 0.11 -1.4 5,625,453 + Pf1N1B4_5079 0.11 -1.1 5,625,454 - +0.1 5,625,454 - Pf1N1B4_5079 0.11 -0.9 5,625,454 - Pf1N1B4_5079 0.11 +0.3 5,625,454 - Pf1N1B4_5079 0.11 -0.8 5,625,748 - Pf1N1B4_5079 0.25 -1.4 5,625,919 - +0.6 5,625,993 + Pf1N1B4_5079 0.36 -1.8 5,626,080 + Pf1N1B4_5079 0.41 -0.7 5,626,080 + -0.4 5,626,081 - Pf1N1B4_5079 0.41 -1.4 5,626,213 - Pf1N1B4_5079 0.47 -1.4 5,626,218 + Pf1N1B4_5079 0.47 -2.8 5,626,218 + -0.4 5,626,218 + Pf1N1B4_5079 0.47 -0.4 5,626,227 + Pf1N1B4_5079 0.48 -1.4 5,626,615 + Pf1N1B4_5079 0.66 -0.2 5,626,662 + Pf1N1B4_5079 0.68 -1.0 5,626,881 + Pf1N1B4_5079 0.79 +0.6 5,626,881 + Pf1N1B4_5079 0.79 -2.4 5,626,882 - Pf1N1B4_5079 0.79 -1.4 5,626,928 - Pf1N1B4_5079 0.81 -0.4 5,627,258 + -1.0 5,627,259 - +0.6 5,627,360 - +0.6 5,627,360 - -1.9 5,627,560 + +0.8 5,627,657 - -0.3 5,627,708 - Pf1N1B4_5080 0.11 -1.0 5,627,868 + Pf1N1B4_5080 0.19 +0.1 5,628,043 + Pf1N1B4_5080 0.28 -0.4 5,628,062 - Pf1N1B4_5080 0.29 -0.9 5,628,145 + Pf1N1B4_5080 0.33 -1.0 5,628,146 - Pf1N1B4_5080 0.33 +1.6 5,628,146 - Pf1N1B4_5080 0.33 -0.9 5,628,172 + Pf1N1B4_5080 0.34 -2.0 5,628,229 + -2.4 5,628,230 - Pf1N1B4_5080 0.37 -2.0 5,628,257 - Pf1N1B4_5080 0.38 -2.8
Or see this region's nucleotide sequence