Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4996

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4995 and Pf1N1B4_4996 are separated by 107 nucleotidesPf1N1B4_4996 and Pf1N1B4_4997 are separated by 40 nucleotides Pf1N1B4_4995 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 5,542,380 to 5,543,303 _4995 Pf1N1B4_4996 - Aspartate aminotransferase (EC 2.6.1.1), at 5,543,411 to 5,544,598 _4996 Pf1N1B4_4997 - Methyl-accepting chemotaxis protein, at 5,544,639 to 5,546,264 _4997 Position (kb) 5543 5544 5545Strain fitness (log2 ratio) -2 -1 0 1 2at 5542.502 kb on + strand, within Pf1N1B4_4995at 5542.503 kb on - strandat 5542.576 kb on - strand, within Pf1N1B4_4995at 5542.773 kb on + strand, within Pf1N1B4_4995at 5542.774 kb on - strand, within Pf1N1B4_4995at 5542.774 kb on - strandat 5542.831 kb on + strand, within Pf1N1B4_4995at 5542.832 kb on - strandat 5542.832 kb on - strand, within Pf1N1B4_4995at 5542.832 kb on - strand, within Pf1N1B4_4995at 5542.836 kb on - strandat 5542.906 kb on - strand, within Pf1N1B4_4995at 5543.089 kb on - strand, within Pf1N1B4_4995at 5543.235 kb on + strandat 5543.235 kb on + strandat 5543.245 kb on - strandat 5543.289 kb on + strandat 5543.510 kb on - strandat 5543.759 kb on + strand, within Pf1N1B4_4996at 5543.979 kb on + strand, within Pf1N1B4_4996at 5544.213 kb on + strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.283 kb on - strand, within Pf1N1B4_4996at 5544.370 kb on + strand, within Pf1N1B4_4996at 5544.371 kb on - strand, within Pf1N1B4_4996at 5544.371 kb on - strandat 5544.396 kb on - strand, within Pf1N1B4_4996at 5544.600 kb on + strandat 5544.600 kb on + strandat 5544.600 kb on + strandat 5544.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,542,502 + Pf1N1B4_4995 0.13 -0.0
5,542,503 - +0.6
5,542,576 - Pf1N1B4_4995 0.21 +0.6
5,542,773 + Pf1N1B4_4995 0.43 +1.1
5,542,774 - Pf1N1B4_4995 0.43 -0.4
5,542,774 - -1.4
5,542,831 + Pf1N1B4_4995 0.49 +0.6
5,542,832 - -0.0
5,542,832 - Pf1N1B4_4995 0.49 +0.2
5,542,832 - Pf1N1B4_4995 0.49 +2.4
5,542,836 - +1.9
5,542,906 - Pf1N1B4_4995 0.57 -2.4
5,543,089 - Pf1N1B4_4995 0.77 -0.7
5,543,235 + +0.4
5,543,235 + +1.6
5,543,245 - -0.4
5,543,289 + +0.6
5,543,510 - +0.8
5,543,759 + Pf1N1B4_4996 0.29 +1.6
5,543,979 + Pf1N1B4_4996 0.48 +0.1
5,544,213 + Pf1N1B4_4996 0.68 +2.4
5,544,214 - Pf1N1B4_4996 0.68 +0.1
5,544,214 - Pf1N1B4_4996 0.68 -0.7
5,544,214 - Pf1N1B4_4996 0.68 -1.4
5,544,214 - Pf1N1B4_4996 0.68 +0.1
5,544,222 + Pf1N1B4_4996 0.68 +0.9
5,544,222 + Pf1N1B4_4996 0.68 -1.0
5,544,222 + Pf1N1B4_4996 0.68 -0.8
5,544,222 + Pf1N1B4_4996 0.68 +1.6
5,544,222 + Pf1N1B4_4996 0.68 -0.0
5,544,223 - Pf1N1B4_4996 0.68 -0.9
5,544,223 - Pf1N1B4_4996 0.68 +0.1
5,544,223 - Pf1N1B4_4996 0.68 -0.1
5,544,223 - Pf1N1B4_4996 0.68 +0.1
5,544,283 - Pf1N1B4_4996 0.73 +0.1
5,544,370 + Pf1N1B4_4996 0.81 -0.0
5,544,371 - Pf1N1B4_4996 0.81 -0.8
5,544,371 - -0.4
5,544,396 - Pf1N1B4_4996 0.83 +1.1
5,544,600 + -0.4
5,544,600 + -1.4
5,544,600 + -0.4
5,544,636 - -0.4

Or see this region's nucleotide sequence