Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_386

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_384 and Pf1N1B4_385 are separated by 158 nucleotidesPf1N1B4_385 and Pf1N1B4_386 are separated by 87 nucleotidesPf1N1B4_386 and Pf1N1B4_387 overlap by 24 nucleotidesPf1N1B4_387 and Pf1N1B4_388 are separated by 120 nucleotides Pf1N1B4_384 - proteinase inhibitor, at 454,198 to 454,452 _384 Pf1N1B4_385 - Translation initiation factor 2 (IF-2; GTPase), at 454,611 to 455,078 _385 Pf1N1B4_386 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 455,166 to 456,605 _386 Pf1N1B4_387 - hypothetical protein, at 456,582 to 456,695 _387 Pf1N1B4_388 - OmpA family protein, at 456,816 to 457,628 _388 Position (kb) 455 456 457Strain fitness (log2 ratio) -2 -1 0 1 2 3at 454.342 kb on - strand, within Pf1N1B4_384at 454.351 kb on + strand, within Pf1N1B4_384at 454.351 kb on + strand, within Pf1N1B4_384at 454.352 kb on - strand, within Pf1N1B4_384at 454.352 kb on - strand, within Pf1N1B4_384at 454.516 kb on + strandat 454.613 kb on - strandat 454.819 kb on - strand, within Pf1N1B4_385at 455.034 kb on + strandat 455.107 kb on + strandat 455.107 kb on + strandat 455.108 kb on - strandat 455.108 kb on - strandat 455.108 kb on - strandat 455.108 kb on - strandat 455.108 kb on - strandat 455.108 kb on - strandat 455.109 kb on + strandat 455.109 kb on + strandat 455.109 kb on + strandat 455.109 kb on + strandat 455.110 kb on - strandat 455.110 kb on - strandat 455.110 kb on - strandat 455.110 kb on - strandat 455.440 kb on + strand, within Pf1N1B4_386at 455.440 kb on + strand, within Pf1N1B4_386at 455.440 kb on + strand, within Pf1N1B4_386at 455.440 kb on + strand, within Pf1N1B4_386at 455.440 kb on + strand, within Pf1N1B4_386at 455.440 kb on + strand, within Pf1N1B4_386at 455.440 kb on + strand, within Pf1N1B4_386at 455.441 kb on - strandat 455.441 kb on - strand, within Pf1N1B4_386at 455.441 kb on - strand, within Pf1N1B4_386at 455.441 kb on - strand, within Pf1N1B4_386at 455.482 kb on + strand, within Pf1N1B4_386at 455.534 kb on - strand, within Pf1N1B4_386at 455.611 kb on + strand, within Pf1N1B4_386at 455.611 kb on + strandat 455.611 kb on + strand, within Pf1N1B4_386at 455.611 kb on + strand, within Pf1N1B4_386at 455.611 kb on + strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.701 kb on + strand, within Pf1N1B4_386at 455.750 kb on - strand, within Pf1N1B4_386at 455.750 kb on - strand, within Pf1N1B4_386at 455.753 kb on + strand, within Pf1N1B4_386at 455.754 kb on - strand, within Pf1N1B4_386at 455.754 kb on - strand, within Pf1N1B4_386at 455.754 kb on - strand, within Pf1N1B4_386at 455.844 kb on - strand, within Pf1N1B4_386at 455.844 kb on - strand, within Pf1N1B4_386at 455.989 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strandat 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 456.036 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strandat 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.404 kb on - strand, within Pf1N1B4_386at 456.404 kb on - strand, within Pf1N1B4_386at 456.538 kb on + strandat 456.538 kb on + strandat 456.539 kb on - strandat 456.539 kb on - strandat 456.578 kb on + strandat 456.578 kb on + strandat 456.578 kb on + strandat 456.578 kb on + strandat 456.579 kb on - strandat 456.579 kb on - strandat 456.579 kb on - strandat 456.579 kb on - strandat 456.586 kb on + strandat 456.586 kb on + strandat 456.586 kb on + strandat 456.586 kb on + strandat 456.634 kb on + strand, within Pf1N1B4_387at 456.634 kb on + strand, within Pf1N1B4_387at 456.634 kb on + strand, within Pf1N1B4_387at 456.635 kb on - strand, within Pf1N1B4_387at 456.665 kb on + strand, within Pf1N1B4_387at 456.673 kb on + strand, within Pf1N1B4_387at 456.703 kb on + strandat 456.703 kb on + strandat 456.703 kb on + strandat 456.703 kb on + strandat 456.944 kb on + strandat 456.944 kb on + strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strandat 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 457.048 kb on + strand, within Pf1N1B4_388at 457.049 kb on - strand, within Pf1N1B4_388at 457.049 kb on - strand, within Pf1N1B4_388at 457.366 kb on + strand, within Pf1N1B4_388at 457.367 kb on - strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.382 kb on - strand, within Pf1N1B4_388at 457.387 kb on + strand, within Pf1N1B4_388at 457.388 kb on - strand, within Pf1N1B4_388at 457.388 kb on - strand, within Pf1N1B4_388at 457.418 kb on - strand, within Pf1N1B4_388at 457.418 kb on - strand, within Pf1N1B4_388at 457.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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454,342 - Pf1N1B4_384 0.56 -1.1
454,351 + Pf1N1B4_384 0.60 -0.1
454,351 + Pf1N1B4_384 0.60 +0.9
454,352 - Pf1N1B4_384 0.60 -0.4
454,352 - Pf1N1B4_384 0.60 -1.1
454,516 + -1.4
454,613 - -0.7
454,819 - Pf1N1B4_385 0.44 +0.7
455,034 + +0.3
455,107 + -0.5
455,107 + +1.0
455,108 - +0.4
455,108 - +0.3
455,108 - -0.1
455,108 - +0.4
455,108 - +0.9
455,108 - -1.1
455,109 + +2.4
455,109 + -0.5
455,109 + -0.7
455,109 + -0.9
455,110 - -0.1
455,110 - -0.6
455,110 - +1.4
455,110 - -0.1
455,440 + Pf1N1B4_386 0.19 +0.4
455,440 + Pf1N1B4_386 0.19 +3.0
455,440 + Pf1N1B4_386 0.19 +1.2
455,440 + Pf1N1B4_386 0.19 +2.9
455,440 + Pf1N1B4_386 0.19 +1.2
455,440 + Pf1N1B4_386 0.19 -0.2
455,440 + Pf1N1B4_386 0.19 +0.3
455,441 - +0.4
455,441 - Pf1N1B4_386 0.19 +1.1
455,441 - Pf1N1B4_386 0.19 +2.2
455,441 - Pf1N1B4_386 0.19 +0.9
455,482 + Pf1N1B4_386 0.22 +1.1
455,534 - Pf1N1B4_386 0.26 +1.4
455,611 + Pf1N1B4_386 0.31 +1.1
455,611 + +1.1
455,611 + Pf1N1B4_386 0.31 +2.3
455,611 + Pf1N1B4_386 0.31 +0.6
455,611 + Pf1N1B4_386 0.31 +1.2
455,612 - Pf1N1B4_386 0.31 +1.4
455,612 - Pf1N1B4_386 0.31 +1.4
455,612 - Pf1N1B4_386 0.31 -0.1
455,612 - Pf1N1B4_386 0.31 +2.6
455,677 + Pf1N1B4_386 0.35 -0.1
455,677 + Pf1N1B4_386 0.35 +1.0
455,677 + Pf1N1B4_386 0.35 -0.7
455,677 + Pf1N1B4_386 0.35 -0.4
455,677 + Pf1N1B4_386 0.35 +2.7
455,677 + Pf1N1B4_386 0.35 +1.4
455,677 + Pf1N1B4_386 0.35 +0.4
455,677 + Pf1N1B4_386 0.35 +0.9
455,677 + Pf1N1B4_386 0.35 +1.4
455,678 - Pf1N1B4_386 0.36 -2.1
455,678 - Pf1N1B4_386 0.36 +0.9
455,678 - Pf1N1B4_386 0.36 +0.9
455,678 - Pf1N1B4_386 0.36 +0.5
455,678 - Pf1N1B4_386 0.36 +1.2
455,678 - Pf1N1B4_386 0.36 +2.2
455,678 - Pf1N1B4_386 0.36 +1.4
455,678 - Pf1N1B4_386 0.36 +1.9
455,701 + Pf1N1B4_386 0.37 -0.7
455,750 - Pf1N1B4_386 0.41 -0.1
455,750 - Pf1N1B4_386 0.41 +1.4
455,753 + Pf1N1B4_386 0.41 +1.1
455,754 - Pf1N1B4_386 0.41 +0.7
455,754 - Pf1N1B4_386 0.41 +0.4
455,754 - Pf1N1B4_386 0.41 -0.1
455,844 - Pf1N1B4_386 0.47 +0.4
455,844 - Pf1N1B4_386 0.47 +1.9
455,989 + Pf1N1B4_386 0.57 +2.2
455,992 + Pf1N1B4_386 0.57 +0.2
455,992 + Pf1N1B4_386 0.57 +1.9
455,992 + Pf1N1B4_386 0.57 +1.9
455,992 + +0.4
455,992 + Pf1N1B4_386 0.57 -0.1
455,992 + Pf1N1B4_386 0.57 +0.1
455,992 + Pf1N1B4_386 0.57 +1.0
455,992 + Pf1N1B4_386 0.57 +0.6
455,992 + Pf1N1B4_386 0.57 -0.7
455,992 + Pf1N1B4_386 0.57 +0.8
456,036 + Pf1N1B4_386 0.60 +1.3
456,172 + Pf1N1B4_386 0.70 +0.9
456,172 + Pf1N1B4_386 0.70 -0.1
456,172 + Pf1N1B4_386 0.70 +1.3
456,172 + +1.4
456,172 + Pf1N1B4_386 0.70 +2.0
456,172 + Pf1N1B4_386 0.70 +2.0
456,172 + Pf1N1B4_386 0.70 +0.6
456,173 - Pf1N1B4_386 0.70 +0.5
456,173 - Pf1N1B4_386 0.70 +2.9
456,173 - Pf1N1B4_386 0.70 +2.3
456,173 - Pf1N1B4_386 0.70 +1.0
456,173 - Pf1N1B4_386 0.70 +1.2
456,245 - Pf1N1B4_386 0.75 +1.1
456,245 - Pf1N1B4_386 0.75 +0.9
456,245 - Pf1N1B4_386 0.75 +1.2
456,245 - Pf1N1B4_386 0.75 +0.6
456,403 + Pf1N1B4_386 0.86 -1.1
456,403 + Pf1N1B4_386 0.86 +1.7
456,403 + Pf1N1B4_386 0.86 +1.2
456,403 + Pf1N1B4_386 0.86 +1.8
456,403 + Pf1N1B4_386 0.86 -0.1
456,403 + Pf1N1B4_386 0.86 +0.6
456,404 - Pf1N1B4_386 0.86 +0.4
456,404 - Pf1N1B4_386 0.86 +1.7
456,538 + +1.2
456,538 + +1.3
456,539 - +0.6
456,539 - +1.3
456,578 + -0.1
456,578 + +1.0
456,578 + +0.4
456,578 + +0.6
456,579 - +0.4
456,579 - +0.9
456,579 - +1.9
456,579 - +2.2
456,586 + -1.1
456,586 + +1.3
456,586 + +2.0
456,586 + +1.4
456,634 + Pf1N1B4_387 0.46 +2.9
456,634 + Pf1N1B4_387 0.46 +3.0
456,634 + Pf1N1B4_387 0.46 +1.0
456,635 - Pf1N1B4_387 0.46 -2.1
456,665 + Pf1N1B4_387 0.73 +0.1
456,673 + Pf1N1B4_387 0.80 +0.4
456,703 + -0.4
456,703 + +0.9
456,703 + -1.1
456,703 + -0.6
456,944 + +0.9
456,944 + Pf1N1B4_388 0.16 +1.7
456,945 - Pf1N1B4_388 0.16 -1.7
456,945 - Pf1N1B4_388 0.16 +0.6
456,945 - Pf1N1B4_388 0.16 +0.3
456,945 - Pf1N1B4_388 0.16 -0.1
456,945 - -0.1
456,945 - Pf1N1B4_388 0.16 -1.5
456,945 - Pf1N1B4_388 0.16 +0.1
456,945 - Pf1N1B4_388 0.16 +0.4
457,048 + Pf1N1B4_388 0.29 +0.3
457,049 - Pf1N1B4_388 0.29 -0.3
457,049 - Pf1N1B4_388 0.29 +0.9
457,366 + Pf1N1B4_388 0.68 +1.1
457,367 - Pf1N1B4_388 0.68 -0.9
457,381 + Pf1N1B4_388 0.69 +1.4
457,381 + Pf1N1B4_388 0.69 +1.9
457,381 + Pf1N1B4_388 0.69 -0.1
457,381 + Pf1N1B4_388 0.69 -2.7
457,381 + Pf1N1B4_388 0.69 +1.0
457,382 - Pf1N1B4_388 0.70 +0.9
457,387 + Pf1N1B4_388 0.70 +0.2
457,388 - Pf1N1B4_388 0.70 +0.3
457,388 - Pf1N1B4_388 0.70 +0.1
457,418 - Pf1N1B4_388 0.74 -0.5
457,418 - Pf1N1B4_388 0.74 +0.9
457,571 - +1.4

Or see this region's nucleotide sequence