Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3678

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3676 and Pf1N1B4_3677 are separated by 479 nucleotidesPf1N1B4_3677 and Pf1N1B4_3678 overlap by 7 nucleotidesPf1N1B4_3678 and Pf1N1B4_3679 are separated by 3 nucleotides Pf1N1B4_3676 - Citrate synthase (si) (EC 2.3.3.1), at 4,083,069 to 4,084,355 _3676 Pf1N1B4_3677 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,084,835 to 4,085,092 _3677 Pf1N1B4_3678 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,085,086 to 4,085,454 _3678 Pf1N1B4_3679 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,085,458 to 4,087,230 _3679 Position (kb) 4085 4086Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4084.178 kb on + strand, within Pf1N1B4_3676at 4084.366 kb on - strandat 4084.366 kb on - strandat 4084.366 kb on - strandat 4084.366 kb on - strandat 4084.366 kb on - strandat 4084.366 kb on - strandat 4084.366 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.370 kb on - strandat 4084.417 kb on - strandat 4084.417 kb on - strandat 4084.417 kb on - strandat 4084.417 kb on - strandat 4084.417 kb on - strandat 4084.417 kb on - strandat 4084.419 kb on - strandat 4084.419 kb on - strandat 4084.419 kb on - strandat 4084.419 kb on - strandat 4084.419 kb on - strandat 4084.419 kb on - strandat 4084.419 kb on - strandat 4084.427 kb on - strandat 4084.506 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.515 kb on - strandat 4084.535 kb on + strandat 4084.535 kb on + strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.536 kb on - strandat 4084.563 kb on + strandat 4084.563 kb on + strandat 4084.571 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strandat 4084.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,084,178 + Pf1N1B4_3676 0.86 -1.3
4,084,366 - +0.1
4,084,366 - +0.6
4,084,366 - +1.4
4,084,366 - -2.2
4,084,366 - -0.1
4,084,366 - +0.2
4,084,366 - +0.8
4,084,370 - -1.2
4,084,370 - +0.3
4,084,370 - +0.4
4,084,370 - -0.2
4,084,370 - +0.9
4,084,370 - -1.2
4,084,370 - +0.4
4,084,370 - -0.2
4,084,370 - -0.4
4,084,370 - +0.8
4,084,370 - -0.2
4,084,370 - +0.8
4,084,370 - +1.8
4,084,370 - -2.8
4,084,370 - +0.4
4,084,370 - -1.8
4,084,417 - +0.8
4,084,417 - +0.9
4,084,417 - -0.2
4,084,417 - -0.2
4,084,417 - -0.2
4,084,417 - +0.8
4,084,419 - -1.2
4,084,419 - -0.8
4,084,419 - +0.3
4,084,419 - -1.3
4,084,419 - -0.2
4,084,419 - -0.5
4,084,419 - -0.2
4,084,427 - -0.6
4,084,506 - -1.8
4,084,515 - +1.0
4,084,515 - -0.2
4,084,515 - -0.2
4,084,515 - +1.4
4,084,515 - +0.2
4,084,535 + -0.5
4,084,535 + -1.6
4,084,536 - -0.6
4,084,536 - +0.3
4,084,536 - +1.2
4,084,536 - +0.4
4,084,536 - -1.2
4,084,563 + +0.8
4,084,563 + +2.1
4,084,571 + -0.5
4,084,579 + +0.2
4,084,579 + -0.4
4,084,579 + -0.5
4,084,579 + +0.6
4,084,579 + -0.2

Or see this region's nucleotide sequence