Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3676 and Pf1N1B4_3677 are separated by 479 nucleotides Pf1N1B4_3677 and Pf1N1B4_3678 overlap by 7 nucleotides Pf1N1B4_3678 and Pf1N1B4_3679 are separated by 3 nucleotides
Pf1N1B4_3676 - Citrate synthase (si) (EC 2.3.3.1), at 4,083,069 to 4,084,355
_3676
Pf1N1B4_3677 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,084,835 to 4,085,092
_3677
Pf1N1B4_3678 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,085,086 to 4,085,454
_3678
Pf1N1B4_3679 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,085,458 to 4,087,230
_3679
Position (kb)
4085
4086 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4084.178 kb on + strand, within Pf1N1B4_3676 at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.427 kb on - strand at 4084.506 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.535 kb on + strand at 4084.535 kb on + strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.563 kb on + strand at 4084.563 kb on + strand at 4084.571 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 4,084,178 + Pf1N1B4_3676 0.86 -1.3 4,084,366 - +0.1 4,084,366 - +0.6 4,084,366 - +1.4 4,084,366 - -2.2 4,084,366 - -0.1 4,084,366 - +0.2 4,084,366 - +0.8 4,084,370 - -1.2 4,084,370 - +0.3 4,084,370 - +0.4 4,084,370 - -0.2 4,084,370 - +0.9 4,084,370 - -1.2 4,084,370 - +0.4 4,084,370 - -0.2 4,084,370 - -0.4 4,084,370 - +0.8 4,084,370 - -0.2 4,084,370 - +0.8 4,084,370 - +1.8 4,084,370 - -2.8 4,084,370 - +0.4 4,084,370 - -1.8 4,084,417 - +0.8 4,084,417 - +0.9 4,084,417 - -0.2 4,084,417 - -0.2 4,084,417 - -0.2 4,084,417 - +0.8 4,084,419 - -1.2 4,084,419 - -0.8 4,084,419 - +0.3 4,084,419 - -1.3 4,084,419 - -0.2 4,084,419 - -0.5 4,084,419 - -0.2 4,084,427 - -0.6 4,084,506 - -1.8 4,084,515 - +1.0 4,084,515 - -0.2 4,084,515 - -0.2 4,084,515 - +1.4 4,084,515 - +0.2 4,084,535 + -0.5 4,084,535 + -1.6 4,084,536 - -0.6 4,084,536 - +0.3 4,084,536 - +1.2 4,084,536 - +0.4 4,084,536 - -1.2 4,084,563 + +0.8 4,084,563 + +2.1 4,084,571 + -0.5 4,084,579 + +0.2 4,084,579 + -0.4 4,084,579 + -0.5 4,084,579 + +0.6 4,084,579 + -0.2
Or see this region's nucleotide sequence