Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06511

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06510 and H281DRAFT_06511 are separated by 145 nucleotidesH281DRAFT_06511 and H281DRAFT_06512 are separated by 236 nucleotides H281DRAFT_06510: H281DRAFT_06510 - methyl-accepting chemotaxis protein, at 57,472 to 59,037 _06510 H281DRAFT_06511: H281DRAFT_06511 - reactive intermediate/imine deaminase, at 59,183 to 59,587 _06511 H281DRAFT_06512: H281DRAFT_06512 - hippurate hydrolase, at 59,824 to 61,035 _06512 Position (kb) 59 60Strain fitness (log2 ratio) -1 0 1at 58.330 kb on - strand, within H281DRAFT_06510at 59.185 kb on - strandat 59.329 kb on - strand, within H281DRAFT_06511at 59.696 kb on - strandat 59.712 kb on - strandat 59.867 kb on + strandat 59.868 kb on - strandat 59.868 kb on - strandat 59.990 kb on + strand, within H281DRAFT_06512at 59.990 kb on + strand, within H281DRAFT_06512at 59.990 kb on + strand, within H281DRAFT_06512at 59.991 kb on - strand, within H281DRAFT_06512at 60.063 kb on + strand, within H281DRAFT_06512at 60.064 kb on - strand, within H281DRAFT_06512at 60.064 kb on - strand, within H281DRAFT_06512at 60.140 kb on + strand, within H281DRAFT_06512at 60.250 kb on - strand, within H281DRAFT_06512at 60.567 kb on - strand, within H281DRAFT_06512

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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58,330 - H281DRAFT_06510 0.55 +0.7
59,185 - +0.2
59,329 - H281DRAFT_06511 0.36 +0.8
59,696 - -0.7
59,712 - +0.2
59,867 + -0.1
59,868 - +0.0
59,868 - +0.1
59,990 + H281DRAFT_06512 0.14 -0.6
59,990 + H281DRAFT_06512 0.14 -0.8
59,990 + H281DRAFT_06512 0.14 -0.6
59,991 - H281DRAFT_06512 0.14 -0.3
60,063 + H281DRAFT_06512 0.20 +1.1
60,064 - H281DRAFT_06512 0.20 +0.8
60,064 - H281DRAFT_06512 0.20 +0.5
60,140 + H281DRAFT_06512 0.26 -0.1
60,250 - H281DRAFT_06512 0.35 -1.0
60,567 - H281DRAFT_06512 0.61 +0.5

Or see this region's nucleotide sequence