Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06421

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06421 and H281DRAFT_06422 are separated by 797 nucleotides H281DRAFT_06421: H281DRAFT_06421 - methyl-accepting chemotaxis protein, at 21,760 to 22,971 _06421 H281DRAFT_06422: H281DRAFT_06422 - hypothetical protein, at 23,769 to 24,071 _06422 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1 2at 20.824 kb on + strandat 20.825 kb on - strandat 20.882 kb on + strandat 20.905 kb on + strandat 20.940 kb on + strandat 20.940 kb on + strandat 20.941 kb on - strandat 21.092 kb on + strandat 21.092 kb on + strandat 21.093 kb on - strandat 21.172 kb on + strandat 21.173 kb on - strandat 21.173 kb on - strandat 21.173 kb on - strandat 21.214 kb on - strandat 21.214 kb on - strandat 21.325 kb on + strandat 21.325 kb on + strandat 21.326 kb on - strandat 21.326 kb on - strandat 21.326 kb on - strandat 21.326 kb on - strandat 21.327 kb on + strandat 21.327 kb on + strandat 21.327 kb on + strandat 21.328 kb on - strandat 21.328 kb on - strandat 21.328 kb on - strandat 21.328 kb on - strandat 21.328 kb on - strandat 21.420 kb on + strandat 21.420 kb on + strandat 21.425 kb on + strandat 21.425 kb on + strandat 21.426 kb on - strandat 21.426 kb on - strandat 21.718 kb on + strandat 21.719 kb on - strandat 21.803 kb on - strandat 21.876 kb on + strandat 21.877 kb on - strandat 21.879 kb on + strandat 21.968 kb on + strand, within H281DRAFT_06421at 21.968 kb on + strand, within H281DRAFT_06421at 21.968 kb on + strand, within H281DRAFT_06421at 21.968 kb on + strand, within H281DRAFT_06421at 21.968 kb on + strand, within H281DRAFT_06421at 21.968 kb on + strand, within H281DRAFT_06421at 21.969 kb on - strand, within H281DRAFT_06421at 21.969 kb on - strand, within H281DRAFT_06421at 21.969 kb on - strand, within H281DRAFT_06421at 22.146 kb on + strand, within H281DRAFT_06421at 22.147 kb on - strand, within H281DRAFT_06421at 22.147 kb on - strand, within H281DRAFT_06421at 22.373 kb on + strand, within H281DRAFT_06421at 22.434 kb on - strand, within H281DRAFT_06421at 22.561 kb on - strand, within H281DRAFT_06421at 22.587 kb on + strand, within H281DRAFT_06421at 22.617 kb on - strand, within H281DRAFT_06421at 22.617 kb on - strand, within H281DRAFT_06421at 23.122 kb on + strandat 23.122 kb on + strandat 23.123 kb on - strandat 23.123 kb on - strandat 23.187 kb on + strandat 23.188 kb on - strandat 23.188 kb on - strandat 23.188 kb on - strandat 23.253 kb on - strandat 23.335 kb on - strandat 23.367 kb on - strandat 23.598 kb on + strandat 23.654 kb on + strandat 23.655 kb on - strandat 23.655 kb on - strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.661 kb on - strandat 23.672 kb on + strandat 23.673 kb on - strandat 23.718 kb on - strandat 23.847 kb on - strand, within H281DRAFT_06422at 23.861 kb on - strand, within H281DRAFT_06422

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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20,824 + -0.3
20,825 - -0.9
20,882 + -0.2
20,905 + -0.6
20,940 + -1.4
20,940 + +0.3
20,941 - +0.4
21,092 + +0.2
21,092 + +0.2
21,093 - -0.2
21,172 + -0.3
21,173 - +0.3
21,173 - +0.2
21,173 - -0.5
21,214 - -0.5
21,214 - +0.5
21,325 + +0.4
21,325 + +0.5
21,326 - +0.4
21,326 - +0.1
21,326 - +0.4
21,326 - -0.4
21,327 + +0.4
21,327 + +0.1
21,327 + +0.2
21,328 - -0.0
21,328 - +0.2
21,328 - -0.2
21,328 - -0.9
21,328 - +0.6
21,420 + +0.2
21,420 + +0.5
21,425 + +1.6
21,425 + -1.2
21,426 - +0.1
21,426 - +0.1
21,718 + +0.4
21,719 - +0.4
21,803 - -0.7
21,876 + +0.1
21,877 - +1.3
21,879 + +1.1
21,968 + H281DRAFT_06421 0.17 -0.3
21,968 + H281DRAFT_06421 0.17 -0.6
21,968 + H281DRAFT_06421 0.17 -0.1
21,968 + H281DRAFT_06421 0.17 +0.6
21,968 + H281DRAFT_06421 0.17 -0.3
21,968 + H281DRAFT_06421 0.17 +0.3
21,969 - H281DRAFT_06421 0.17 -1.0
21,969 - H281DRAFT_06421 0.17 -0.1
21,969 - H281DRAFT_06421 0.17 +0.3
22,146 + H281DRAFT_06421 0.32 -0.2
22,147 - H281DRAFT_06421 0.32 -0.3
22,147 - H281DRAFT_06421 0.32 -0.3
22,373 + H281DRAFT_06421 0.51 +0.2
22,434 - H281DRAFT_06421 0.56 +0.9
22,561 - H281DRAFT_06421 0.66 +0.4
22,587 + H281DRAFT_06421 0.68 +0.1
22,617 - H281DRAFT_06421 0.71 +0.1
22,617 - H281DRAFT_06421 0.71 -0.3
23,122 + +0.5
23,122 + +0.8
23,123 - +0.7
23,123 - +0.2
23,187 + -0.3
23,188 - +2.3
23,188 - -0.4
23,188 - -0.7
23,253 - +0.2
23,335 - -0.0
23,367 - -0.2
23,598 + +0.5
23,654 + +0.8
23,655 - -1.3
23,655 - +1.7
23,660 + +0.3
23,660 + +0.2
23,660 + +1.2
23,660 + +0.2
23,660 + +0.1
23,661 - +0.8
23,672 + -0.0
23,673 - -0.5
23,718 - +0.4
23,847 - H281DRAFT_06422 0.26 +0.2
23,861 - H281DRAFT_06422 0.30 -0.2

Or see this region's nucleotide sequence