Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05920

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05919 and H281DRAFT_05920 are separated by 215 nucleotidesH281DRAFT_05920 and H281DRAFT_05921 are separated by 256 nucleotides H281DRAFT_05919: H281DRAFT_05919 - dihydroxy-acid dehydratase, at 51,326 to 53,110 _05919 H281DRAFT_05920: H281DRAFT_05920 - transcriptional regulator, LacI family, at 53,326 to 54,381 _05920 H281DRAFT_05921: H281DRAFT_05921 - Sugar phosphate permease, at 54,638 to 55,990 _05921 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.505 kb on - strand, within H281DRAFT_05919at 52.505 kb on - strand, within H281DRAFT_05919at 52.791 kb on + strand, within H281DRAFT_05919at 53.031 kb on + strandat 53.472 kb on + strand, within H281DRAFT_05920at 53.994 kb on - strand, within H281DRAFT_05920at 54.200 kb on + strand, within H281DRAFT_05920at 54.226 kb on + strand, within H281DRAFT_05920at 54.486 kb on + strandat 54.487 kb on - strandat 54.618 kb on - strandat 54.618 kb on - strandat 54.747 kb on - strandat 54.759 kb on - strandat 54.935 kb on - strand, within H281DRAFT_05921at 55.022 kb on + strand, within H281DRAFT_05921at 55.082 kb on + strand, within H281DRAFT_05921at 55.084 kb on + strand, within H281DRAFT_05921at 55.262 kb on - strand, within H281DRAFT_05921

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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52,505 - H281DRAFT_05919 0.66 +0.5
52,505 - H281DRAFT_05919 0.66 +0.2
52,791 + H281DRAFT_05919 0.82 +0.3
53,031 + +0.6
53,472 + H281DRAFT_05920 0.14 +1.8
53,994 - H281DRAFT_05920 0.63 +1.5
54,200 + H281DRAFT_05920 0.83 +1.8
54,226 + H281DRAFT_05920 0.85 +1.4
54,486 + +0.7
54,487 - -1.3
54,618 - -0.4
54,618 - -1.9
54,747 - -1.1
54,759 - -1.1
54,935 - H281DRAFT_05921 0.22 -1.0
55,022 + H281DRAFT_05921 0.28 -1.0
55,082 + H281DRAFT_05921 0.33 -0.2
55,084 + H281DRAFT_05921 0.33 -2.2
55,262 - H281DRAFT_05921 0.46 -0.9

Or see this region's nucleotide sequence