Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05754

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05753 and H281DRAFT_05754 are separated by 200 nucleotidesH281DRAFT_05754 and H281DRAFT_05755 overlap by 8 nucleotidesH281DRAFT_05755 and H281DRAFT_05756 are separated by 28 nucleotides H281DRAFT_05753: H281DRAFT_05753 - flagellar biosynthesis protein FlhA, at 26,287 to 28,389 _05753 H281DRAFT_05754: H281DRAFT_05754 - flagellar biosynthesis protein FlhF, at 28,590 to 30,743 _05754 H281DRAFT_05755: H281DRAFT_05755 - flagellar biosynthesis protein FlhG, at 30,736 to 31,605 _05755 H281DRAFT_05756: H281DRAFT_05756 - RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG, at 31,634 to 32,368 _05756 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 27.730 kb on + strand, within H281DRAFT_05753at 27.731 kb on - strand, within H281DRAFT_05753at 28.185 kb on + strandat 28.186 kb on - strandat 28.365 kb on + strandat 28.366 kb on - strandat 28.460 kb on - strandat 28.460 kb on - strandat 28.522 kb on + strandat 28.523 kb on - strandat 28.523 kb on - strandat 28.587 kb on + strandat 28.587 kb on + strandat 28.632 kb on + strandat 28.642 kb on + strandat 28.643 kb on - strandat 28.685 kb on + strandat 28.730 kb on + strandat 28.730 kb on + strandat 28.732 kb on + strandat 28.733 kb on - strandat 28.733 kb on - strandat 28.778 kb on + strandat 28.779 kb on - strandat 28.779 kb on - strandat 29.517 kb on + strand, within H281DRAFT_05754at 29.518 kb on - strand, within H281DRAFT_05754at 29.518 kb on - strand, within H281DRAFT_05754at 30.309 kb on - strand, within H281DRAFT_05754at 30.537 kb on + strandat 30.555 kb on + strandat 30.556 kb on - strandat 30.591 kb on + strandat 30.591 kb on + strandat 30.592 kb on - strandat 30.592 kb on - strandat 30.688 kb on + strandat 30.688 kb on + strandat 30.689 kb on - strandat 30.689 kb on - strandat 30.841 kb on - strand, within H281DRAFT_05755at 30.841 kb on - strandat 31.229 kb on - strand, within H281DRAFT_05755at 31.637 kb on + strandat 31.637 kb on + strandat 31.639 kb on + strandat 31.682 kb on + strandat 31.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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27,730 + H281DRAFT_05753 0.69 +0.9
27,731 - H281DRAFT_05753 0.69 +0.8
28,185 + +1.5
28,186 - +0.5
28,365 + +0.8
28,366 - -0.7
28,460 - -0.7
28,460 - -0.7
28,522 + -0.3
28,523 - -0.6
28,523 - +0.6
28,587 + +0.2
28,587 + -0.0
28,632 + +0.6
28,642 + -1.2
28,643 - +0.5
28,685 + -0.2
28,730 + +0.2
28,730 + +0.0
28,732 + -2.1
28,733 - +1.3
28,733 - +1.1
28,778 + +1.0
28,779 - +0.8
28,779 - +0.5
29,517 + H281DRAFT_05754 0.43 +1.1
29,518 - H281DRAFT_05754 0.43 +1.0
29,518 - H281DRAFT_05754 0.43 +0.6
30,309 - H281DRAFT_05754 0.80 +0.5
30,537 + +0.8
30,555 + +1.9
30,556 - +1.1
30,591 + +1.7
30,591 + +0.7
30,592 - +0.4
30,592 - +1.9
30,688 + -0.2
30,688 + +0.4
30,689 - +1.0
30,689 - +0.0
30,841 - H281DRAFT_05755 0.12 +0.2
30,841 - +0.8
31,229 - H281DRAFT_05755 0.57 +0.6
31,637 + +0.6
31,637 + +0.6
31,639 + +0.2
31,682 + +1.5
31,683 - +0.5

Or see this region's nucleotide sequence