Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05601

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05600 and H281DRAFT_05601 are separated by 216 nucleotidesH281DRAFT_05601 and H281DRAFT_05602 are separated by 116 nucleotides H281DRAFT_05600: H281DRAFT_05600 - cell division checkpoint GTPase YihA, at 19,161 to 19,814 _05600 H281DRAFT_05601: H281DRAFT_05601 - hypothetical protein, at 20,031 to 20,684 _05601 H281DRAFT_05602: H281DRAFT_05602 - cytochrome c biogenesis protein, at 20,801 to 22,999 _05602 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 19.882 kb on - strandat 19.897 kb on - strandat 19.897 kb on - strandat 19.902 kb on - strandat 19.906 kb on + strandat 19.906 kb on + strandat 19.906 kb on + strandat 19.907 kb on - strandat 19.907 kb on - strandat 19.907 kb on - strandat 19.907 kb on - strandat 19.984 kb on + strandat 19.984 kb on + strandat 19.984 kb on + strandat 20.069 kb on - strandat 20.069 kb on - strandat 20.069 kb on - strandat 20.239 kb on - strand, within H281DRAFT_05601at 20.319 kb on - strand, within H281DRAFT_05601at 20.365 kb on - strand, within H281DRAFT_05601at 20.548 kb on - strand, within H281DRAFT_05601at 20.665 kb on - strandat 20.682 kb on + strandat 20.682 kb on + strandat 20.682 kb on + strandat 20.683 kb on - strandat 20.796 kb on + strandat 20.796 kb on + strandat 20.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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19,882 - +0.3
19,897 - -0.2
19,897 - -0.1
19,902 - -0.3
19,906 + -0.2
19,906 + +0.3
19,906 + +0.1
19,907 - -0.5
19,907 - -0.4
19,907 - +0.3
19,907 - -0.1
19,984 + -0.1
19,984 + -0.1
19,984 + +2.0
20,069 - +0.1
20,069 - +1.1
20,069 - +0.9
20,239 - H281DRAFT_05601 0.32 +1.6
20,319 - H281DRAFT_05601 0.44 -2.1
20,365 - H281DRAFT_05601 0.51 +1.4
20,548 - H281DRAFT_05601 0.79 -0.1
20,665 - +0.6
20,682 + -1.6
20,682 + +0.3
20,682 + -0.4
20,683 - -0.1
20,796 + -0.4
20,796 + +0.7
20,868 + +1.2

Or see this region's nucleotide sequence