Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04993

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04992 and H281DRAFT_04993 are separated by 301 nucleotidesH281DRAFT_04993 and H281DRAFT_04994 are separated by 8 nucleotidesH281DRAFT_04994 and H281DRAFT_04995 are separated by 166 nucleotides H281DRAFT_04992: H281DRAFT_04992 - hypothetical protein, at 178,268 to 179,230 _04992 H281DRAFT_04993: H281DRAFT_04993 - hypothetical protein, at 179,532 to 179,849 _04993 H281DRAFT_04994: H281DRAFT_04994 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 179,858 to 180,340 _04994 H281DRAFT_04995: H281DRAFT_04995 - type III secretion protein HrpB1, at 180,507 to 180,938 _04995 Position (kb) 179 180Strain fitness (log2 ratio) -1 0 1at 178.698 kb on + strand, within H281DRAFT_04992at 179.203 kb on + strandat 179.204 kb on - strandat 179.216 kb on - strandat 179.296 kb on + strandat 179.408 kb on + strandat 179.680 kb on - strand, within H281DRAFT_04993at 180.672 kb on - strand, within H281DRAFT_04995at 180.672 kb on - strand, within H281DRAFT_04995

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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178,698 + H281DRAFT_04992 0.45 -1.1
179,203 + +0.5
179,204 - -0.5
179,216 - -0.1
179,296 + +0.4
179,408 + -0.4
179,680 - H281DRAFT_04993 0.47 +0.6
180,672 - H281DRAFT_04995 0.38 -1.5
180,672 - H281DRAFT_04995 0.38 -0.7

Or see this region's nucleotide sequence