Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04710

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04709 and H281DRAFT_04710 are separated by 145 nucleotidesH281DRAFT_04710 and H281DRAFT_04711 are separated by 144 nucleotides H281DRAFT_04709: H281DRAFT_04709 - Predicted PurR-regulated permease PerM, at 121,828 to 122,904 _04709 H281DRAFT_04710: H281DRAFT_04710 - phosphoribosylformylglycinamidine cyclo-ligase, at 123,050 to 124,117 _04710 H281DRAFT_04711: H281DRAFT_04711 - tRNA dimethylallyltransferase, at 124,262 to 125,242 _04711 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1at 122.142 kb on - strand, within H281DRAFT_04709at 122.252 kb on - strand, within H281DRAFT_04709at 122.252 kb on - strand, within H281DRAFT_04709at 122.382 kb on - strand, within H281DRAFT_04709at 122.390 kb on - strand, within H281DRAFT_04709at 122.390 kb on - strand, within H281DRAFT_04709at 122.466 kb on - strand, within H281DRAFT_04709at 122.519 kb on - strand, within H281DRAFT_04709at 122.766 kb on - strand, within H281DRAFT_04709at 122.966 kb on - strandat 122.995 kb on - strandat 123.027 kb on + strandat 123.401 kb on + strand, within H281DRAFT_04710at 123.402 kb on - strand, within H281DRAFT_04710at 123.402 kb on - strand, within H281DRAFT_04710at 123.402 kb on - strand, within H281DRAFT_04710at 123.525 kb on - strand, within H281DRAFT_04710at 123.761 kb on + strand, within H281DRAFT_04710at 123.761 kb on + strandat 124.115 kb on + strandat 124.116 kb on - strandat 124.116 kb on - strandat 124.116 kb on - strandat 124.143 kb on + strandat 124.144 kb on - strandat 124.146 kb on + strandat 124.191 kb on + strandat 124.192 kb on - strandat 124.215 kb on + strandat 124.216 kb on - strandat 124.263 kb on + strandat 124.263 kb on + strandat 124.264 kb on - strandat 124.264 kb on - strandat 124.995 kb on + strand, within H281DRAFT_04711

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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122,142 - H281DRAFT_04709 0.29 +0.4
122,252 - H281DRAFT_04709 0.39 +0.2
122,252 - H281DRAFT_04709 0.39 +0.2
122,382 - H281DRAFT_04709 0.51 +0.2
122,390 - H281DRAFT_04709 0.52 +0.8
122,390 - H281DRAFT_04709 0.52 +0.6
122,466 - H281DRAFT_04709 0.59 +0.9
122,519 - H281DRAFT_04709 0.64 +0.2
122,766 - H281DRAFT_04709 0.87 -0.4
122,966 - -0.4
122,995 - -0.8
123,027 + +0.2
123,401 + H281DRAFT_04710 0.33 -1.5
123,402 - H281DRAFT_04710 0.33 -2.0
123,402 - H281DRAFT_04710 0.33 -2.1
123,402 - H281DRAFT_04710 0.33 +0.2
123,525 - H281DRAFT_04710 0.44 -2.0
123,761 + H281DRAFT_04710 0.67 -2.0
123,761 + -1.2
124,115 + -0.5
124,116 - -0.3
124,116 - -0.1
124,116 - +0.8
124,143 + +0.5
124,144 - -0.4
124,146 + -0.3
124,191 + +0.7
124,192 - -0.3
124,215 + -0.4
124,216 - +0.0
124,263 + +0.6
124,263 + -0.0
124,264 - +0.1
124,264 - -0.5
124,995 + H281DRAFT_04711 0.75 -1.1

Or see this region's nucleotide sequence