Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03708

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03707 and H281DRAFT_03708 are separated by 308 nucleotidesH281DRAFT_03708 and H281DRAFT_03709 overlap by 4 nucleotides H281DRAFT_03707: H281DRAFT_03707 - transcriptional regulator, IclR family, at 221,069 to 221,875 _03707 H281DRAFT_03708: H281DRAFT_03708 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 222,184 to 223,170 _03708 H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441 _03709 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1at 221.516 kb on + strand, within H281DRAFT_03707at 221.516 kb on + strand, within H281DRAFT_03707at 221.517 kb on - strand, within H281DRAFT_03707at 221.517 kb on - strand, within H281DRAFT_03707at 221.520 kb on + strand, within H281DRAFT_03707at 221.521 kb on - strand, within H281DRAFT_03707at 221.521 kb on - strand, within H281DRAFT_03707at 221.644 kb on - strand, within H281DRAFT_03707at 221.644 kb on - strand, within H281DRAFT_03707at 221.693 kb on + strand, within H281DRAFT_03707at 221.693 kb on + strand, within H281DRAFT_03707at 221.693 kb on + strand, within H281DRAFT_03707at 221.694 kb on - strand, within H281DRAFT_03707at 221.696 kb on + strand, within H281DRAFT_03707at 221.707 kb on + strand, within H281DRAFT_03707at 221.708 kb on - strand, within H281DRAFT_03707at 221.718 kb on + strand, within H281DRAFT_03707at 221.813 kb on + strandat 221.814 kb on - strandat 221.878 kb on + strandat 221.905 kb on - strandat 222.180 kb on + strandat 222.180 kb on + strandat 222.181 kb on - strandat 222.323 kb on + strand, within H281DRAFT_03708at 222.374 kb on + strand, within H281DRAFT_03708at 222.402 kb on + strand, within H281DRAFT_03708at 222.851 kb on + strand, within H281DRAFT_03708at 222.851 kb on + strand, within H281DRAFT_03708at 223.016 kb on + strand, within H281DRAFT_03708at 223.064 kb on - strand, within H281DRAFT_03708at 223.248 kb on - strandat 223.566 kb on + strand, within H281DRAFT_03709at 223.567 kb on - strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.622 kb on + strand, within H281DRAFT_03709at 223.622 kb on + strand, within H281DRAFT_03709at 223.622 kb on + strand, within H281DRAFT_03709at 223.870 kb on - strand, within H281DRAFT_03709at 224.106 kb on + strand, within H281DRAFT_03709

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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221,516 + H281DRAFT_03707 0.55 +0.0
221,516 + H281DRAFT_03707 0.55 -1.8
221,517 - H281DRAFT_03707 0.56 +0.7
221,517 - H281DRAFT_03707 0.56 -0.2
221,520 + H281DRAFT_03707 0.56 +0.3
221,521 - H281DRAFT_03707 0.56 -0.7
221,521 - H281DRAFT_03707 0.56 -0.4
221,644 - H281DRAFT_03707 0.71 +0.3
221,644 - H281DRAFT_03707 0.71 -0.2
221,693 + H281DRAFT_03707 0.77 -0.6
221,693 + H281DRAFT_03707 0.77 +0.2
221,693 + H281DRAFT_03707 0.77 -0.6
221,694 - H281DRAFT_03707 0.77 -0.6
221,696 + H281DRAFT_03707 0.78 -1.6
221,707 + H281DRAFT_03707 0.79 +0.3
221,708 - H281DRAFT_03707 0.79 -0.0
221,718 + H281DRAFT_03707 0.80 -0.3
221,813 + -0.5
221,814 - +0.7
221,878 + +0.0
221,905 - -0.1
222,180 + -0.1
222,180 + -0.6
222,181 - +0.4
222,323 + H281DRAFT_03708 0.14 -0.7
222,374 + H281DRAFT_03708 0.19 -0.2
222,402 + H281DRAFT_03708 0.22 +0.1
222,851 + H281DRAFT_03708 0.68 -1.1
222,851 + H281DRAFT_03708 0.68 -0.4
223,016 + H281DRAFT_03708 0.84 +0.7
223,064 - H281DRAFT_03708 0.89 -0.5
223,248 - +0.4
223,566 + H281DRAFT_03709 0.31 +0.7
223,567 - H281DRAFT_03709 0.31 +0.4
223,620 + H281DRAFT_03709 0.36 -0.0
223,620 + H281DRAFT_03709 0.36 -0.3
223,620 + H281DRAFT_03709 0.36 +0.0
223,620 + H281DRAFT_03709 0.36 -0.3
223,620 + H281DRAFT_03709 0.36 +0.4
223,621 - H281DRAFT_03709 0.36 -0.1
223,621 - H281DRAFT_03709 0.36 -1.7
223,621 - H281DRAFT_03709 0.36 +0.4
223,621 - H281DRAFT_03709 0.36 -0.2
223,621 - H281DRAFT_03709 0.36 -0.6
223,621 - H281DRAFT_03709 0.36 +0.6
223,622 + H281DRAFT_03709 0.36 +0.4
223,622 + H281DRAFT_03709 0.36 -0.9
223,622 + H281DRAFT_03709 0.36 +0.5
223,870 - H281DRAFT_03709 0.55 +0.3
224,106 + H281DRAFT_03709 0.74 +0.3

Or see this region's nucleotide sequence