Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03615

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03613 and H281DRAFT_03614 are separated by 223 nucleotidesH281DRAFT_03614 and H281DRAFT_03615 are separated by 142 nucleotidesH281DRAFT_03615 and H281DRAFT_03616 are separated by 10 nucleotides H281DRAFT_03613: H281DRAFT_03613 - hypothetical protein, at 122,830 to 125,445 _03613 H281DRAFT_03614: H281DRAFT_03614 - ABC-type transporter Mla maintaining outer membrane lipid asymmetry, MlaC component, at 125,669 to 126,274 _03614 H281DRAFT_03615: H281DRAFT_03615 - hopanoid biosynthesis associated radical SAM protein HpnH, at 126,417 to 127,571 _03615 H281DRAFT_03616: H281DRAFT_03616 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 127,582 to 128,526 _03616 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2 3at 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.447 kb on + strandat 125.464 kb on - strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.498 kb on - strandat 125.498 kb on - strandat 125.498 kb on - strandat 125.499 kb on + strandat 125.594 kb on + strandat 125.595 kb on - strandat 125.595 kb on - strandat 125.596 kb on + strandat 125.596 kb on + strandat 125.597 kb on - strandat 125.597 kb on - strandat 125.668 kb on + strandat 125.668 kb on + strandat 125.668 kb on + strandat 125.678 kb on + strandat 125.706 kb on + strandat 125.751 kb on + strand, within H281DRAFT_03614at 125.752 kb on - strand, within H281DRAFT_03614at 125.770 kb on + strand, within H281DRAFT_03614at 125.939 kb on + strand, within H281DRAFT_03614at 125.939 kb on + strand, within H281DRAFT_03614at 125.939 kb on + strand, within H281DRAFT_03614at 125.940 kb on - strand, within H281DRAFT_03614at 125.940 kb on - strand, within H281DRAFT_03614at 125.940 kb on - strand, within H281DRAFT_03614at 125.972 kb on + strand, within H281DRAFT_03614at 125.972 kb on + strand, within H281DRAFT_03614at 125.973 kb on - strand, within H281DRAFT_03614at 126.143 kb on + strand, within H281DRAFT_03614at 126.143 kb on + strand, within H281DRAFT_03614at 126.143 kb on + strand, within H281DRAFT_03614at 126.144 kb on - strand, within H281DRAFT_03614at 126.144 kb on - strand, within H281DRAFT_03614at 126.154 kb on + strand, within H281DRAFT_03614at 126.154 kb on + strand, within H281DRAFT_03614at 126.155 kb on - strand, within H281DRAFT_03614at 126.155 kb on - strand, within H281DRAFT_03614at 126.183 kb on - strand, within H281DRAFT_03614at 126.305 kb on + strandat 126.305 kb on + strandat 126.508 kb on + strandat 126.508 kb on + strandat 126.509 kb on - strandat 126.653 kb on + strand, within H281DRAFT_03615at 126.653 kb on + strand, within H281DRAFT_03615at 126.654 kb on - strand, within H281DRAFT_03615at 126.688 kb on + strand, within H281DRAFT_03615at 126.689 kb on - strandat 126.689 kb on - strand, within H281DRAFT_03615at 126.755 kb on - strand, within H281DRAFT_03615at 126.814 kb on + strand, within H281DRAFT_03615at 126.815 kb on - strand, within H281DRAFT_03615at 126.964 kb on + strand, within H281DRAFT_03615at 126.965 kb on - strand, within H281DRAFT_03615at 126.965 kb on - strand, within H281DRAFT_03615at 126.970 kb on + strand, within H281DRAFT_03615at 127.201 kb on + strand, within H281DRAFT_03615at 127.202 kb on - strand, within H281DRAFT_03615at 127.202 kb on - strand, within H281DRAFT_03615at 127.217 kb on - strand, within H281DRAFT_03615at 127.253 kb on + strand, within H281DRAFT_03615at 127.254 kb on - strand, within H281DRAFT_03615at 127.261 kb on + strand, within H281DRAFT_03615at 127.275 kb on - strand, within H281DRAFT_03615at 127.531 kb on + strandat 127.554 kb on + strandat 127.584 kb on - strandat 127.702 kb on + strand, within H281DRAFT_03616at 127.703 kb on - strand, within H281DRAFT_03616at 127.703 kb on - strandat 127.808 kb on + strand, within H281DRAFT_03616at 127.809 kb on - strand, within H281DRAFT_03616at 127.809 kb on - strand, within H281DRAFT_03616at 127.943 kb on + strand, within H281DRAFT_03616at 127.944 kb on - strand, within H281DRAFT_03616at 128.005 kb on - strand, within H281DRAFT_03616at 128.048 kb on + strand, within H281DRAFT_03616at 128.048 kb on + strand, within H281DRAFT_03616at 128.049 kb on - strand, within H281DRAFT_03616at 128.201 kb on + strand, within H281DRAFT_03616at 128.202 kb on - strand, within H281DRAFT_03616at 128.202 kb on - strand, within H281DRAFT_03616at 128.202 kb on - strand, within H281DRAFT_03616at 128.202 kb on - strand, within H281DRAFT_03616at 128.202 kb on - strand, within H281DRAFT_03616at 128.202 kb on - strand, within H281DRAFT_03616at 128.422 kb on + strand, within H281DRAFT_03616at 128.422 kb on + strand, within H281DRAFT_03616at 128.422 kb on + strand, within H281DRAFT_03616at 128.423 kb on - strand, within H281DRAFT_03616at 128.426 kb on + strand, within H281DRAFT_03616at 128.426 kb on + strand, within H281DRAFT_03616at 128.427 kb on - strand, within H281DRAFT_03616at 128.526 kb on + strandat 128.526 kb on + strandat 128.526 kb on + strandat 128.526 kb on + strandat 128.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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125,430 + +0.4
125,430 + +2.8
125,430 + -0.2
125,430 + -1.9
125,431 - -0.7
125,431 - +0.8
125,431 - +0.5
125,431 - -1.1
125,447 + -0.8
125,464 - -0.3
125,497 + +2.0
125,497 + +0.8
125,497 + -0.6
125,497 + +0.4
125,497 + +0.2
125,498 - +0.2
125,498 - +0.8
125,498 - -0.3
125,499 + -0.7
125,594 + -0.2
125,595 - +0.1
125,595 - -0.7
125,596 + +0.1
125,596 + +1.0
125,597 - +0.1
125,597 - +0.5
125,668 + -0.0
125,668 + +0.2
125,668 + -0.3
125,678 + +1.0
125,706 + +0.2
125,751 + H281DRAFT_03614 0.14 +2.1
125,752 - H281DRAFT_03614 0.14 -0.3
125,770 + H281DRAFT_03614 0.17 -0.1
125,939 + H281DRAFT_03614 0.45 -0.1
125,939 + H281DRAFT_03614 0.45 -0.7
125,939 + H281DRAFT_03614 0.45 +0.6
125,940 - H281DRAFT_03614 0.45 +0.4
125,940 - H281DRAFT_03614 0.45 +0.5
125,940 - H281DRAFT_03614 0.45 +0.7
125,972 + H281DRAFT_03614 0.50 +0.0
125,972 + H281DRAFT_03614 0.50 -0.4
125,973 - H281DRAFT_03614 0.50 -0.1
126,143 + H281DRAFT_03614 0.78 +0.6
126,143 + H281DRAFT_03614 0.78 -0.5
126,143 + H281DRAFT_03614 0.78 -0.1
126,144 - H281DRAFT_03614 0.78 +0.1
126,144 - H281DRAFT_03614 0.78 -0.4
126,154 + H281DRAFT_03614 0.80 -0.7
126,154 + H281DRAFT_03614 0.80 +0.9
126,155 - H281DRAFT_03614 0.80 +1.1
126,155 - H281DRAFT_03614 0.80 -0.0
126,183 - H281DRAFT_03614 0.85 +0.1
126,305 + -0.2
126,305 + -0.1
126,508 + +0.0
126,508 + +0.6
126,509 - -1.6
126,653 + H281DRAFT_03615 0.20 -0.7
126,653 + H281DRAFT_03615 0.20 -1.6
126,654 - H281DRAFT_03615 0.21 +1.5
126,688 + H281DRAFT_03615 0.23 +1.8
126,689 - +0.8
126,689 - H281DRAFT_03615 0.24 -1.2
126,755 - H281DRAFT_03615 0.29 -1.8
126,814 + H281DRAFT_03615 0.34 -0.4
126,815 - H281DRAFT_03615 0.34 -1.7
126,964 + H281DRAFT_03615 0.47 -0.5
126,965 - H281DRAFT_03615 0.47 -0.4
126,965 - H281DRAFT_03615 0.47 -1.7
126,970 + H281DRAFT_03615 0.48 -1.6
127,201 + H281DRAFT_03615 0.68 -0.8
127,202 - H281DRAFT_03615 0.68 +1.9
127,202 - H281DRAFT_03615 0.68 -0.4
127,217 - H281DRAFT_03615 0.69 -1.6
127,253 + H281DRAFT_03615 0.72 -0.3
127,254 - H281DRAFT_03615 0.72 -0.8
127,261 + H281DRAFT_03615 0.73 +2.3
127,275 - H281DRAFT_03615 0.74 -2.3
127,531 + +1.8
127,554 + -0.6
127,584 - -2.6
127,702 + H281DRAFT_03616 0.13 -0.1
127,703 - H281DRAFT_03616 0.13 -0.2
127,703 - -0.6
127,808 + H281DRAFT_03616 0.24 -0.8
127,809 - H281DRAFT_03616 0.24 +0.0
127,809 - H281DRAFT_03616 0.24 -1.2
127,943 + H281DRAFT_03616 0.38 +0.4
127,944 - H281DRAFT_03616 0.38 +0.3
128,005 - H281DRAFT_03616 0.45 -1.3
128,048 + H281DRAFT_03616 0.49 +0.1
128,048 + H281DRAFT_03616 0.49 +0.2
128,049 - H281DRAFT_03616 0.49 -0.2
128,201 + H281DRAFT_03616 0.66 +0.4
128,202 - H281DRAFT_03616 0.66 +0.5
128,202 - H281DRAFT_03616 0.66 -0.1
128,202 - H281DRAFT_03616 0.66 -1.6
128,202 - H281DRAFT_03616 0.66 -0.6
128,202 - H281DRAFT_03616 0.66 +0.4
128,202 - H281DRAFT_03616 0.66 -0.1
128,422 + H281DRAFT_03616 0.89 +0.3
128,422 + H281DRAFT_03616 0.89 -1.6
128,422 + H281DRAFT_03616 0.89 +0.3
128,423 - H281DRAFT_03616 0.89 +0.0
128,426 + H281DRAFT_03616 0.89 +0.2
128,426 + H281DRAFT_03616 0.89 +0.3
128,427 - H281DRAFT_03616 0.89 -1.0
128,526 + -0.6
128,526 + +0.3
128,526 + -0.5
128,526 + -0.8
128,526 + -0.4

Or see this region's nucleotide sequence