Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01413

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01411 and H281DRAFT_01412 are separated by 497 nucleotidesH281DRAFT_01412 and H281DRAFT_01413 are separated by 43 nucleotidesH281DRAFT_01413 and H281DRAFT_01414 are separated by 337 nucleotides H281DRAFT_01411: H281DRAFT_01411 - hypothetical protein, at 264,917 to 265,420 _01411 H281DRAFT_01412: H281DRAFT_01412 - Superinfection immunity protein, at 265,918 to 266,277 _01412 H281DRAFT_01413: H281DRAFT_01413 - hypothetical protein, at 266,321 to 266,596 _01413 H281DRAFT_01414: H281DRAFT_01414 - hypothetical protein, at 266,934 to 267,182 _01414 Position (kb) 266 267Strain fitness (log2 ratio) -1 0 1at 265.415 kb on - strandat 265.415 kb on - strandat 265.763 kb on + strandat 265.763 kb on + strandat 266.229 kb on - strand, within H281DRAFT_01412at 266.304 kb on - strandat 266.322 kb on + strandat 266.555 kb on - strand, within H281DRAFT_01413at 266.730 kb on + strandat 266.831 kb on + strandat 266.929 kb on + strandat 267.007 kb on - strand, within H281DRAFT_01414at 267.207 kb on + strandat 267.444 kb on + strandat 267.445 kb on - strandat 267.449 kb on + strandat 267.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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265,415 - +0.2
265,415 - +0.1
265,763 + +0.9
265,763 + +0.2
266,229 - H281DRAFT_01412 0.86 -0.6
266,304 - -0.2
266,322 + +0.0
266,555 - H281DRAFT_01413 0.85 +0.6
266,730 + -0.8
266,831 + +0.0
266,929 + +0.2
267,007 - H281DRAFT_01414 0.29 -0.3
267,207 + +0.1
267,444 + -0.7
267,445 - +0.4
267,449 + +0.5
267,450 - +0.1

Or see this region's nucleotide sequence