Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01187

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01186 and H281DRAFT_01187 are separated by 155 nucleotidesH281DRAFT_01187 and H281DRAFT_01188 are separated by 132 nucleotides H281DRAFT_01186: H281DRAFT_01186 - DNA-binding transcriptional regulator, LysR family, at 22,760 to 23,671 _01186 H281DRAFT_01187: H281DRAFT_01187 - short chain enoyl-CoA hydratase (EC 4.2.1.17), at 23,827 to 24,624 _01187 H281DRAFT_01188: H281DRAFT_01188 - 3-oxoacyl-[acyl-carrier protein] reductase, at 24,757 to 25,509 _01188 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1at 22.898 kb on - strand, within H281DRAFT_01186at 22.954 kb on + strand, within H281DRAFT_01186at 23.315 kb on + strand, within H281DRAFT_01186at 23.555 kb on + strand, within H281DRAFT_01186at 23.555 kb on + strand, within H281DRAFT_01186at 23.556 kb on - strand, within H281DRAFT_01186at 23.556 kb on - strand, within H281DRAFT_01186at 23.556 kb on - strand, within H281DRAFT_01186at 24.162 kb on + strand, within H281DRAFT_01187at 24.217 kb on + strand, within H281DRAFT_01187at 25.227 kb on + strand, within H281DRAFT_01188at 25.227 kb on + strand, within H281DRAFT_01188at 25.228 kb on - strand, within H281DRAFT_01188at 25.228 kb on - strand, within H281DRAFT_01188

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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22,898 - H281DRAFT_01186 0.15 +0.6
22,954 + H281DRAFT_01186 0.21 +1.4
23,315 + H281DRAFT_01186 0.61 +0.8
23,555 + H281DRAFT_01186 0.87 +0.3
23,555 + H281DRAFT_01186 0.87 +0.2
23,556 - H281DRAFT_01186 0.87 +0.4
23,556 - H281DRAFT_01186 0.87 -1.1
23,556 - H281DRAFT_01186 0.87 -1.2
24,162 + H281DRAFT_01187 0.42 -1.1
24,217 + H281DRAFT_01187 0.49 -0.4
25,227 + H281DRAFT_01188 0.62 +0.1
25,227 + H281DRAFT_01188 0.62 +0.6
25,228 - H281DRAFT_01188 0.63 -0.1
25,228 - H281DRAFT_01188 0.63 -0.5

Or see this region's nucleotide sequence