Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01101

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01099 and H281DRAFT_01100 are separated by 23 nucleotidesH281DRAFT_01100 and H281DRAFT_01101 are separated by 201 nucleotidesH281DRAFT_01101 and H281DRAFT_01102 are separated by 62 nucleotides H281DRAFT_01099: H281DRAFT_01099 - XapX domain-containing protein, at 1,235,325 to 1,235,630 _01099 H281DRAFT_01100: H281DRAFT_01100 - hypothetical protein, at 1,235,654 to 1,236,295 _01100 H281DRAFT_01101: H281DRAFT_01101 - Small-conductance mechanosensitive channel, at 1,236,497 to 1,237,966 _01101 H281DRAFT_01102: H281DRAFT_01102 - hypothetical protein, at 1,238,029 to 1,239,900 _01102 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -1 0 1 2 3at 1235.623 kb on + strandat 1235.865 kb on + strand, within H281DRAFT_01100at 1235.981 kb on + strand, within H281DRAFT_01100at 1235.981 kb on + strand, within H281DRAFT_01100at 1235.981 kb on + strand, within H281DRAFT_01100at 1236.309 kb on + strandat 1236.887 kb on - strand, within H281DRAFT_01101at 1237.090 kb on - strand, within H281DRAFT_01101at 1237.830 kb on + strandat 1237.939 kb on - strandat 1238.190 kb on - strandat 1238.303 kb on - strand, within H281DRAFT_01102at 1238.345 kb on + strandat 1238.487 kb on - strand, within H281DRAFT_01102

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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1,235,623 + +0.3
1,235,865 + H281DRAFT_01100 0.33 -1.1
1,235,981 + H281DRAFT_01100 0.51 +0.0
1,235,981 + H281DRAFT_01100 0.51 +1.9
1,235,981 + H281DRAFT_01100 0.51 -0.5
1,236,309 + -1.4
1,236,887 - H281DRAFT_01101 0.27 +0.2
1,237,090 - H281DRAFT_01101 0.40 +2.3
1,237,830 + +3.5
1,237,939 - +0.3
1,238,190 - -0.3
1,238,303 - H281DRAFT_01102 0.15 +0.5
1,238,345 + +1.1
1,238,487 - H281DRAFT_01102 0.24 +0.4

Or see this region's nucleotide sequence