Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00998

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00997 and H281DRAFT_00998 are separated by 656 nucleotidesH281DRAFT_00998 and H281DRAFT_00999 overlap by 4 nucleotides H281DRAFT_00997: H281DRAFT_00997 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 1,119,020 to 1,120,171 _00997 H281DRAFT_00998: H281DRAFT_00998 - outer membrane protein, multidrug efflux system, at 1,120,828 to 1,122,285 _00998 H281DRAFT_00999: H281DRAFT_00999 - multidrug efflux pump, at 1,122,282 to 1,125,482 _00999 Position (kb) 1120 1121 1122 1123Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1120.520 kb on + strandat 1120.633 kb on + strandat 1120.860 kb on - strandat 1120.922 kb on + strandat 1120.977 kb on - strand, within H281DRAFT_00998at 1121.051 kb on + strand, within H281DRAFT_00998at 1121.948 kb on + strand, within H281DRAFT_00998at 1122.206 kb on + strandat 1122.643 kb on + strand, within H281DRAFT_00999at 1122.643 kb on + strand, within H281DRAFT_00999at 1122.747 kb on + strand, within H281DRAFT_00999at 1122.747 kb on + strand, within H281DRAFT_00999at 1122.748 kb on - strand, within H281DRAFT_00999at 1122.830 kb on - strand, within H281DRAFT_00999at 1123.039 kb on + strand, within H281DRAFT_00999at 1123.163 kb on - strand, within H281DRAFT_00999at 1123.184 kb on - strand, within H281DRAFT_00999at 1123.184 kb on - strand, within H281DRAFT_00999at 1123.226 kb on - strand, within H281DRAFT_00999

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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1,120,520 + +0.9
1,120,633 + +0.4
1,120,860 - -0.4
1,120,922 + +1.1
1,120,977 - H281DRAFT_00998 0.10 +0.5
1,121,051 + H281DRAFT_00998 0.15 +3.1
1,121,948 + H281DRAFT_00998 0.77 -2.3
1,122,206 + +0.3
1,122,643 + H281DRAFT_00999 0.11 +0.2
1,122,643 + H281DRAFT_00999 0.11 +0.3
1,122,747 + H281DRAFT_00999 0.15 +0.3
1,122,747 + H281DRAFT_00999 0.15 +1.0
1,122,748 - H281DRAFT_00999 0.15 -0.1
1,122,830 - H281DRAFT_00999 0.17 -0.5
1,123,039 + H281DRAFT_00999 0.24 +1.3
1,123,163 - H281DRAFT_00999 0.28 +0.0
1,123,184 - H281DRAFT_00999 0.28 -0.6
1,123,184 - H281DRAFT_00999 0.28 -0.5
1,123,226 - H281DRAFT_00999 0.29 -0.7

Or see this region's nucleotide sequence