Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00849

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00848 and H281DRAFT_00849 overlap by 4 nucleotidesH281DRAFT_00849 and H281DRAFT_00850 are separated by 518 nucleotidesH281DRAFT_00850 and H281DRAFT_00851 are separated by 49 nucleotides H281DRAFT_00848: H281DRAFT_00848 - ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-), at 937,486 to 938,763 _00848 H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620 _00849 H281DRAFT_00850: H281DRAFT_00850 - hypothetical protein, at 940,139 to 940,306 _00850 H281DRAFT_00851: H281DRAFT_00851 - polyhydroxyalkanoate synthase, at 940,356 to 942,116 _00851 Position (kb) 938 939 940Strain fitness (log2 ratio) -3 -2 -1 0 1at 938.440 kb on + strand, within H281DRAFT_00848at 938.441 kb on - strand, within H281DRAFT_00848at 938.644 kb on + strandat 938.644 kb on + strandat 938.645 kb on - strandat 938.645 kb on - strandat 938.647 kb on + strandat 938.647 kb on + strandat 938.648 kb on - strandat 938.983 kb on + strand, within H281DRAFT_00849at 938.984 kb on - strand, within H281DRAFT_00849at 939.294 kb on + strand, within H281DRAFT_00849at 939.295 kb on - strand, within H281DRAFT_00849at 939.331 kb on + strand, within H281DRAFT_00849at 939.537 kb on + strandat 939.537 kb on + strandat 939.543 kb on + strandat 939.544 kb on - strandat 939.662 kb on + strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.727 kb on + strandat 939.728 kb on - strandat 939.735 kb on + strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.764 kb on + strandat 939.765 kb on - strandat 939.839 kb on + strandat 939.840 kb on - strandat 939.840 kb on - strandat 939.849 kb on + strandat 939.850 kb on - strandat 939.925 kb on + strandat 939.925 kb on + strandat 939.939 kb on + strandat 940.030 kb on + strandat 940.127 kb on + strandat 940.128 kb on - strandat 940.502 kb on + strandat 940.502 kb on + strandat 940.502 kb on + strandat 940.503 kb on - strandat 940.503 kb on - strandat 940.554 kb on + strand, within H281DRAFT_00851at 940.555 kb on - strand, within H281DRAFT_00851

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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938,440 + H281DRAFT_00848 0.75 +0.0
938,441 - H281DRAFT_00848 0.75 -0.5
938,644 + +0.1
938,644 + +0.5
938,645 - +0.8
938,645 - -0.6
938,647 + +0.2
938,647 + +0.6
938,648 - +0.3
938,983 + H281DRAFT_00849 0.26 -0.8
938,984 - H281DRAFT_00849 0.26 -0.5
939,294 + H281DRAFT_00849 0.62 +0.2
939,295 - H281DRAFT_00849 0.62 -0.2
939,331 + H281DRAFT_00849 0.66 -0.1
939,537 + +0.0
939,537 + +0.9
939,543 + +0.5
939,544 - +0.9
939,662 + -0.4
939,663 - -0.1
939,663 - -3.0
939,663 - -0.1
939,727 + +0.3
939,728 - +0.5
939,735 + -1.4
939,736 - +0.9
939,736 - -0.4
939,736 - +0.2
939,736 - -0.2
939,764 + -1.4
939,765 - -0.1
939,839 + +0.1
939,840 - +0.1
939,840 - +0.9
939,849 + +0.1
939,850 - -0.1
939,925 + +0.3
939,925 + -0.1
939,939 + -0.7
940,030 + +0.8
940,127 + +0.8
940,128 - -1.4
940,502 + +0.5
940,502 + -1.1
940,502 + -1.9
940,503 - -2.7
940,503 - -1.3
940,554 + H281DRAFT_00851 0.11 -2.7
940,555 - H281DRAFT_00851 0.11 -2.9

Or see this region's nucleotide sequence