Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00821

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00819 and H281DRAFT_00820 are separated by 322 nucleotidesH281DRAFT_00820 and H281DRAFT_00821 overlap by 49 nucleotidesH281DRAFT_00821 and H281DRAFT_00822 are separated by 123 nucleotides H281DRAFT_00819: H281DRAFT_00819 - competence protein ComEA, at 908,828 to 909,439 _00819 H281DRAFT_00820: H281DRAFT_00820 - DNA-binding transcriptional regulator, MerR family, at 909,762 to 910,268 _00820 H281DRAFT_00821: H281DRAFT_00821 - 4-carboxymuconolactone decarboxylase, at 910,220 to 910,657 _00821 H281DRAFT_00822: H281DRAFT_00822 - multidrug resistance protein, MATE family, at 910,781 to 912,160 _00822 Position (kb) 910 911Strain fitness (log2 ratio) -2 -1 0 1 2at 909.511 kb on - strandat 909.536 kb on - strandat 909.580 kb on - strandat 909.580 kb on - strandat 909.600 kb on + strandat 909.696 kb on - strandat 909.827 kb on + strand, within H281DRAFT_00820at 909.838 kb on - strand, within H281DRAFT_00820at 909.840 kb on + strand, within H281DRAFT_00820at 910.114 kb on - strand, within H281DRAFT_00820at 910.116 kb on + strand, within H281DRAFT_00820at 910.117 kb on - strand, within H281DRAFT_00820at 910.366 kb on + strand, within H281DRAFT_00821at 910.367 kb on - strand, within H281DRAFT_00821at 910.370 kb on + strand, within H281DRAFT_00821at 910.370 kb on + strand, within H281DRAFT_00821at 910.370 kb on + strand, within H281DRAFT_00821at 910.371 kb on - strand, within H281DRAFT_00821at 910.465 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.536 kb on - strand, within H281DRAFT_00821at 911.001 kb on + strand, within H281DRAFT_00822at 911.002 kb on - strand, within H281DRAFT_00822at 911.031 kb on + strand, within H281DRAFT_00822at 911.032 kb on - strand, within H281DRAFT_00822at 911.032 kb on - strand, within H281DRAFT_00822at 911.157 kb on + strand, within H281DRAFT_00822at 911.317 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.320 kb on - strand, within H281DRAFT_00822at 911.320 kb on - strand, within H281DRAFT_00822at 911.407 kb on - strand, within H281DRAFT_00822at 911.407 kb on - strand, within H281DRAFT_00822at 911.647 kb on + strand, within H281DRAFT_00822at 911.647 kb on + strand, within H281DRAFT_00822at 911.647 kb on + strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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909,511 - +0.0
909,536 - +2.1
909,580 - +0.4
909,580 - +0.3
909,600 + +0.1
909,696 - +0.7
909,827 + H281DRAFT_00820 0.13 +0.3
909,838 - H281DRAFT_00820 0.15 +0.1
909,840 + H281DRAFT_00820 0.15 +2.1
910,114 - H281DRAFT_00820 0.69 -0.3
910,116 + H281DRAFT_00820 0.70 -2.5
910,117 - H281DRAFT_00820 0.70 +0.2
910,366 + H281DRAFT_00821 0.33 -0.0
910,367 - H281DRAFT_00821 0.34 -0.2
910,370 + H281DRAFT_00821 0.34 -0.0
910,370 + H281DRAFT_00821 0.34 +0.4
910,370 + H281DRAFT_00821 0.34 +0.1
910,371 - H281DRAFT_00821 0.34 -1.7
910,465 + H281DRAFT_00821 0.56 -0.6
910,535 + H281DRAFT_00821 0.72 -0.2
910,535 + H281DRAFT_00821 0.72 -0.8
910,535 + H281DRAFT_00821 0.72 -0.5
910,535 + H281DRAFT_00821 0.72 -0.2
910,536 - H281DRAFT_00821 0.72 +0.2
911,001 + H281DRAFT_00822 0.16 +0.5
911,002 - H281DRAFT_00822 0.16 -0.4
911,031 + H281DRAFT_00822 0.18 +0.8
911,032 - H281DRAFT_00822 0.18 -0.4
911,032 - H281DRAFT_00822 0.18 +0.7
911,157 + H281DRAFT_00822 0.27 -0.2
911,317 + H281DRAFT_00822 0.39 -0.1
911,319 + H281DRAFT_00822 0.39 +0.9
911,319 + H281DRAFT_00822 0.39 -0.7
911,319 + H281DRAFT_00822 0.39 -0.1
911,319 + H281DRAFT_00822 0.39 +0.5
911,320 - H281DRAFT_00822 0.39 -0.1
911,320 - H281DRAFT_00822 0.39 +0.9
911,407 - H281DRAFT_00822 0.45 -0.3
911,407 - H281DRAFT_00822 0.45 -0.1
911,647 + H281DRAFT_00822 0.63 +0.8
911,647 + H281DRAFT_00822 0.63 -0.4
911,647 + H281DRAFT_00822 0.63 +0.8
911,648 - H281DRAFT_00822 0.63 -0.2
911,648 - H281DRAFT_00822 0.63 +0.5
911,648 - H281DRAFT_00822 0.63 -1.2
911,648 - H281DRAFT_00822 0.63 -0.2

Or see this region's nucleotide sequence