Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00504

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00503 and H281DRAFT_00504 are separated by 114 nucleotidesH281DRAFT_00504 and H281DRAFT_00505 are separated by 109 nucleotidesH281DRAFT_00505 and H281DRAFT_00506 are separated by 47 nucleotides H281DRAFT_00503: H281DRAFT_00503 - Pimeloyl-ACP methyl ester carboxylesterase, at 564,513 to 565,397 _00503 H281DRAFT_00504: H281DRAFT_00504 - hypothetical protein, at 565,512 to 566,345 _00504 H281DRAFT_00505: H281DRAFT_00505 - tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family, at 566,455 to 567,090 _00505 H281DRAFT_00506: H281DRAFT_00506 - Zn-dependent protease (includes SpoIVFB), at 567,138 to 567,800 _00506 Position (kb) 565 566 567Strain fitness (log2 ratio) -1 0 1 2at 564.760 kb on - strand, within H281DRAFT_00503at 564.792 kb on + strand, within H281DRAFT_00503at 564.793 kb on - strand, within H281DRAFT_00503at 564.996 kb on + strand, within H281DRAFT_00503at 564.997 kb on - strand, within H281DRAFT_00503at 565.158 kb on + strand, within H281DRAFT_00503at 565.686 kb on + strand, within H281DRAFT_00504at 565.687 kb on - strand, within H281DRAFT_00504at 565.687 kb on - strandat 565.728 kb on - strand, within H281DRAFT_00504at 565.866 kb on + strand, within H281DRAFT_00504at 565.884 kb on + strand, within H281DRAFT_00504at 565.885 kb on - strand, within H281DRAFT_00504at 566.094 kb on + strand, within H281DRAFT_00504at 566.100 kb on + strand, within H281DRAFT_00504at 566.100 kb on + strand, within H281DRAFT_00504at 566.419 kb on + strandat 566.743 kb on + strand, within H281DRAFT_00505at 566.743 kb on + strand, within H281DRAFT_00505at 566.743 kb on + strand, within H281DRAFT_00505at 566.744 kb on - strand, within H281DRAFT_00505at 566.891 kb on + strand, within H281DRAFT_00505at 567.124 kb on + strandat 567.125 kb on - strandat 567.125 kb on - strandat 567.137 kb on + strandat 567.154 kb on + strandat 567.255 kb on + strand, within H281DRAFT_00506

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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564,760 - H281DRAFT_00503 0.28 +0.2
564,792 + H281DRAFT_00503 0.32 +0.4
564,793 - H281DRAFT_00503 0.32 -0.1
564,996 + H281DRAFT_00503 0.55 -1.0
564,997 - H281DRAFT_00503 0.55 -0.4
565,158 + H281DRAFT_00503 0.73 -0.3
565,686 + H281DRAFT_00504 0.21 +0.2
565,687 - H281DRAFT_00504 0.21 +1.0
565,687 - +2.6
565,728 - H281DRAFT_00504 0.26 -0.7
565,866 + H281DRAFT_00504 0.42 -0.4
565,884 + H281DRAFT_00504 0.45 +1.1
565,885 - H281DRAFT_00504 0.45 +0.6
566,094 + H281DRAFT_00504 0.70 +1.3
566,100 + H281DRAFT_00504 0.71 +1.8
566,100 + H281DRAFT_00504 0.71 +0.1
566,419 + -1.0
566,743 + H281DRAFT_00505 0.45 -0.4
566,743 + H281DRAFT_00505 0.45 -0.4
566,743 + H281DRAFT_00505 0.45 +0.2
566,744 - H281DRAFT_00505 0.45 -0.2
566,891 + H281DRAFT_00505 0.69 -0.5
567,124 + -0.3
567,125 - -0.8
567,125 - +2.6
567,137 + +0.2
567,154 + +0.5
567,255 + H281DRAFT_00506 0.18 -0.4

Or see this region's nucleotide sequence