Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00467

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00466 and H281DRAFT_00467 are separated by 85 nucleotidesH281DRAFT_00467 and H281DRAFT_00468 are separated by 208 nucleotides H281DRAFT_00466: H281DRAFT_00466 - pyruvate dehydrogenase E1 component, at 521,176 to 523,872 _00466 H281DRAFT_00467: H281DRAFT_00467 - pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 523,958 to 525,646 _00467 H281DRAFT_00468: H281DRAFT_00468 - dihydrolipoamide dehydrogenase, at 525,855 to 527,627 _00468 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 523.870 kb on + strandat 524.000 kb on + strandat 525.697 kb on + strandat 525.697 kb on + strandat 525.697 kb on + strandat 525.697 kb on + strandat 525.838 kb on + strandat 525.838 kb on + strandat 525.839 kb on - strandat 525.854 kb on + strandat 525.855 kb on - strandat 525.855 kb on - strandat 525.855 kb on - strandat 525.871 kb on + strandat 526.359 kb on - strand, within H281DRAFT_00468

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
remove
523,870 + -0.6
524,000 + -1.4
525,697 + -1.0
525,697 + -0.3
525,697 + -0.6
525,697 + +0.6
525,838 + -1.0
525,838 + -0.6
525,839 - +0.6
525,854 + -1.0
525,855 - -0.2
525,855 - +3.2
525,855 - -3.0
525,871 + -0.2
526,359 - H281DRAFT_00468 0.28 -0.3

Or see this region's nucleotide sequence