Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00295

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00294 and H281DRAFT_00295 are separated by 66 nucleotidesH281DRAFT_00295 and H281DRAFT_00296 are separated by 208 nucleotides H281DRAFT_00294: H281DRAFT_00294 - electron transport complex protein RnfB, at 313,755 to 314,789 _00294 H281DRAFT_00295: H281DRAFT_00295 - transcriptional regulator, TetR family, at 314,856 to 315,554 _00295 H281DRAFT_00296: H281DRAFT_00296 - poly(3-hydroxybutyrate) depolymerase, at 315,763 to 317,040 _00296 Position (kb) 314 315 316Strain fitness (log2 ratio) -2 -1 0 1at 314.856 kb on - strandat 314.856 kb on - strandat 315.069 kb on + strand, within H281DRAFT_00295at 315.069 kb on + strand, within H281DRAFT_00295at 315.075 kb on + strand, within H281DRAFT_00295at 315.110 kb on - strand, within H281DRAFT_00295at 315.188 kb on + strand, within H281DRAFT_00295at 315.188 kb on + strand, within H281DRAFT_00295at 315.279 kb on + strand, within H281DRAFT_00295at 315.280 kb on - strand, within H281DRAFT_00295at 315.281 kb on + strand, within H281DRAFT_00295at 315.281 kb on + strand, within H281DRAFT_00295at 315.281 kb on + strand, within H281DRAFT_00295at 315.281 kb on + strand, within H281DRAFT_00295at 315.281 kb on + strand, within H281DRAFT_00295at 315.282 kb on - strand, within H281DRAFT_00295at 315.282 kb on - strand, within H281DRAFT_00295at 315.403 kb on - strand, within H281DRAFT_00295at 315.403 kb on - strandat 315.427 kb on - strand, within H281DRAFT_00295at 315.429 kb on + strand, within H281DRAFT_00295at 315.429 kb on + strand, within H281DRAFT_00295at 315.429 kb on + strand, within H281DRAFT_00295at 315.429 kb on + strand, within H281DRAFT_00295at 315.430 kb on - strand, within H281DRAFT_00295at 315.537 kb on + strandat 315.538 kb on - strandat 315.678 kb on + strandat 315.679 kb on - strandat 315.679 kb on - strandat 315.870 kb on + strandat 315.871 kb on - strandat 315.871 kb on - strandat 315.875 kb on + strandat 316.106 kb on + strand, within H281DRAFT_00296at 316.139 kb on + strand, within H281DRAFT_00296at 316.139 kb on + strand, within H281DRAFT_00296at 316.140 kb on - strand, within H281DRAFT_00296at 316.148 kb on + strand, within H281DRAFT_00296at 316.301 kb on + strand, within H281DRAFT_00296at 316.346 kb on + strand, within H281DRAFT_00296at 316.389 kb on + strand, within H281DRAFT_00296

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
remove
314,856 - -0.7
314,856 - -0.1
315,069 + H281DRAFT_00295 0.30 -0.5
315,069 + H281DRAFT_00295 0.30 -0.2
315,075 + H281DRAFT_00295 0.31 -0.8
315,110 - H281DRAFT_00295 0.36 -0.1
315,188 + H281DRAFT_00295 0.47 -2.6
315,188 + H281DRAFT_00295 0.47 -0.9
315,279 + H281DRAFT_00295 0.61 +1.1
315,280 - H281DRAFT_00295 0.61 -2.4
315,281 + H281DRAFT_00295 0.61 +1.2
315,281 + H281DRAFT_00295 0.61 -1.1
315,281 + H281DRAFT_00295 0.61 +1.1
315,281 + H281DRAFT_00295 0.61 +0.3
315,281 + H281DRAFT_00295 0.61 -0.5
315,282 - H281DRAFT_00295 0.61 -0.4
315,282 - H281DRAFT_00295 0.61 -0.3
315,403 - H281DRAFT_00295 0.78 -1.2
315,403 - -0.9
315,427 - H281DRAFT_00295 0.82 -0.4
315,429 + H281DRAFT_00295 0.82 -1.5
315,429 + H281DRAFT_00295 0.82 -0.3
315,429 + H281DRAFT_00295 0.82 -0.1
315,429 + H281DRAFT_00295 0.82 +1.1
315,430 - H281DRAFT_00295 0.82 -0.5
315,537 + -0.3
315,538 - -1.5
315,678 + +0.1
315,679 - -0.1
315,679 - +0.6
315,870 + -0.2
315,871 - -0.3
315,871 - -1.2
315,875 + -0.3
316,106 + H281DRAFT_00296 0.27 -0.2
316,139 + H281DRAFT_00296 0.29 +0.3
316,139 + H281DRAFT_00296 0.29 -0.2
316,140 - H281DRAFT_00296 0.29 -0.0
316,148 + H281DRAFT_00296 0.30 -0.6
316,301 + H281DRAFT_00296 0.42 -1.3
316,346 + H281DRAFT_00296 0.46 +1.1
316,389 + H281DRAFT_00296 0.49 +0.3

Or see this region's nucleotide sequence