Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00065

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00063 and H281DRAFT_00064 are separated by 135 nucleotidesH281DRAFT_00064 and H281DRAFT_00065 are separated by 24 nucleotidesH281DRAFT_00065 and H281DRAFT_00066 are separated by 77 nucleotides H281DRAFT_00063: H281DRAFT_00063 - hypothetical protein, at 65,252 to 65,557 _00063 H281DRAFT_00064: H281DRAFT_00064 - hypothetical protein, at 65,693 to 66,235 _00064 H281DRAFT_00065: H281DRAFT_00065 - hypothetical protein, at 66,260 to 66,358 _00065 H281DRAFT_00066: H281DRAFT_00066 - hypothetical protein, at 66,436 to 67,059 _00066 Position (kb) 66 67Strain fitness (log2 ratio) -1 0 1at 65.287 kb on - strand, within H281DRAFT_00063at 65.305 kb on + strand, within H281DRAFT_00063at 65.307 kb on + strand, within H281DRAFT_00063at 65.312 kb on + strand, within H281DRAFT_00063at 65.313 kb on - strand, within H281DRAFT_00063at 65.313 kb on - strand, within H281DRAFT_00063at 65.313 kb on - strand, within H281DRAFT_00063at 65.313 kb on - strand, within H281DRAFT_00063at 65.316 kb on + strand, within H281DRAFT_00063at 65.319 kb on - strand, within H281DRAFT_00063at 65.439 kb on + strand, within H281DRAFT_00063at 65.441 kb on + strand, within H281DRAFT_00063at 65.442 kb on - strandat 65.442 kb on - strand, within H281DRAFT_00063at 65.494 kb on - strand, within H281DRAFT_00063at 65.585 kb on + strandat 65.586 kb on - strandat 65.586 kb on - strandat 65.590 kb on - strandat 65.644 kb on + strandat 65.677 kb on + strandat 65.678 kb on - strandat 65.745 kb on - strandat 65.859 kb on - strand, within H281DRAFT_00064at 65.920 kb on + strand, within H281DRAFT_00064at 65.973 kb on + strand, within H281DRAFT_00064at 65.997 kb on + strand, within H281DRAFT_00064at 66.240 kb on + strandat 66.273 kb on - strand, within H281DRAFT_00065at 66.356 kb on + strandat 66.356 kb on + strandat 66.867 kb on + strand, within H281DRAFT_00066at 66.985 kb on + strand, within H281DRAFT_00066at 67.058 kb on - strandat 67.206 kb on + strandat 67.257 kb on + strandat 67.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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65,287 - H281DRAFT_00063 0.11 +0.1
65,305 + H281DRAFT_00063 0.17 -0.8
65,307 + H281DRAFT_00063 0.18 -0.9
65,312 + H281DRAFT_00063 0.20 -0.2
65,313 - H281DRAFT_00063 0.20 +1.6
65,313 - H281DRAFT_00063 0.20 +1.1
65,313 - H281DRAFT_00063 0.20 -0.4
65,313 - H281DRAFT_00063 0.20 -0.1
65,316 + H281DRAFT_00063 0.21 -0.4
65,319 - H281DRAFT_00063 0.22 -0.9
65,439 + H281DRAFT_00063 0.61 -0.4
65,441 + H281DRAFT_00063 0.62 +0.1
65,442 - +1.7
65,442 - H281DRAFT_00063 0.62 +0.1
65,494 - H281DRAFT_00063 0.79 -0.4
65,585 + +0.7
65,586 - +0.5
65,586 - -0.2
65,590 - +0.4
65,644 + +0.2
65,677 + -0.5
65,678 - +0.4
65,745 - +0.1
65,859 - H281DRAFT_00064 0.31 -1.5
65,920 + H281DRAFT_00064 0.42 +0.3
65,973 + H281DRAFT_00064 0.52 +0.2
65,997 + H281DRAFT_00064 0.56 -0.3
66,240 + -0.9
66,273 - H281DRAFT_00065 0.13 +0.2
66,356 + -1.2
66,356 + +0.2
66,867 + H281DRAFT_00066 0.69 +0.8
66,985 + H281DRAFT_00066 0.88 +1.1
67,058 - -0.1
67,206 + +0.5
67,257 + -0.3
67,257 + -0.3

Or see this region's nucleotide sequence