Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19185 and CSW01_19190 are separated by 255 nucleotides CSW01_19190 and CSW01_19195 are separated by 76 nucleotides
CSW01_19185: CSW01_19185 - 3-methyladenine DNA glycosylase, at 964,271 to 965,629
_19185
CSW01_19190: CSW01_19190 - DoxX family protein, at 965,885 to 966,331
_19190
CSW01_19195: CSW01_19195 - LysR family transcriptional regulator, at 966,408 to 967,328
_19195
Position (kb) 965
966
967 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 964.887 kb on - strand, within CSW01_19185 at 964.890 kb on - strand, within CSW01_19185 at 964.894 kb on + strand, within CSW01_19185 at 964.902 kb on - strand, within CSW01_19185 at 964.903 kb on + strand, within CSW01_19185 at 964.957 kb on + strand, within CSW01_19185 at 964.958 kb on + strand, within CSW01_19185 at 964.972 kb on - strand, within CSW01_19185 at 965.009 kb on + strand, within CSW01_19185 at 965.017 kb on - strand, within CSW01_19185 at 965.041 kb on - strand, within CSW01_19185 at 965.156 kb on - strand, within CSW01_19185 at 965.299 kb on + strand, within CSW01_19185 at 965.299 kb on + strand, within CSW01_19185 at 965.308 kb on - strand, within CSW01_19185 at 965.539 kb on - strand at 965.579 kb on + strand at 965.587 kb on - strand at 965.599 kb on + strand at 965.657 kb on + strand at 965.670 kb on - strand at 965.675 kb on + strand at 965.675 kb on + strand at 965.675 kb on + strand at 965.683 kb on - strand at 965.699 kb on + strand at 965.707 kb on - strand at 965.909 kb on + strand at 965.937 kb on + strand, within CSW01_19190 at 965.937 kb on + strand, within CSW01_19190 at 965.937 kb on + strand, within CSW01_19190 at 965.945 kb on - strand, within CSW01_19190 at 965.945 kb on - strand, within CSW01_19190 at 965.950 kb on - strand, within CSW01_19190 at 965.982 kb on + strand, within CSW01_19190 at 966.032 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.062 kb on - strand, within CSW01_19190 at 966.065 kb on + strand, within CSW01_19190 at 966.065 kb on + strand, within CSW01_19190 at 966.333 kb on - strand at 966.390 kb on + strand at 966.415 kb on + strand at 966.567 kb on + strand, within CSW01_19195 at 966.596 kb on - strand, within CSW01_19195 at 966.596 kb on - strand, within CSW01_19195 at 966.608 kb on - strand, within CSW01_19195 at 966.781 kb on + strand, within CSW01_19195 at 966.841 kb on + strand, within CSW01_19195 at 966.913 kb on - strand, within CSW01_19195 at 966.962 kb on + strand, within CSW01_19195 at 966.962 kb on + strand, within CSW01_19195 at 966.970 kb on - strand, within CSW01_19195 at 966.970 kb on - strand, within CSW01_19195 at 966.988 kb on + strand, within CSW01_19195 at 967.015 kb on - strand, within CSW01_19195 at 967.036 kb on - strand, within CSW01_19195 at 967.073 kb on - strand, within CSW01_19195 at 967.078 kb on + strand, within CSW01_19195 at 967.078 kb on + strand, within CSW01_19195 at 967.078 kb on + strand, within CSW01_19195 at 967.117 kb on - strand, within CSW01_19195 at 967.147 kb on + strand, within CSW01_19195 at 967.249 kb on + strand at 967.259 kb on + strand at 967.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 964,887 - CSW01_19185 0.45 -0.3 964,890 - CSW01_19185 0.46 -2.3 964,894 + CSW01_19185 0.46 +0.1 964,902 - CSW01_19185 0.46 +1.9 964,903 + CSW01_19185 0.47 -2.5 964,957 + CSW01_19185 0.50 -2.0 964,958 + CSW01_19185 0.51 -1.0 964,972 - CSW01_19185 0.52 -0.5 965,009 + CSW01_19185 0.54 +0.8 965,017 - CSW01_19185 0.55 -0.1 965,041 - CSW01_19185 0.57 -0.3 965,156 - CSW01_19185 0.65 -3.3 965,299 + CSW01_19185 0.76 -1.7 965,299 + CSW01_19185 0.76 -1.2 965,308 - CSW01_19185 0.76 -1.7 965,539 - -1.5 965,579 + -0.3 965,587 - -1.5 965,599 + +0.4 965,657 + +0.1 965,670 - -1.8 965,675 + +1.0 965,675 + -0.9 965,675 + -1.3 965,683 - +1.6 965,699 + +2.1 965,707 - -0.7 965,909 + +0.9 965,937 + CSW01_19190 0.12 -1.6 965,937 + CSW01_19190 0.12 -3.0 965,937 + CSW01_19190 0.12 -1.6 965,945 - CSW01_19190 0.13 -1.0 965,945 - CSW01_19190 0.13 -1.0 965,950 - CSW01_19190 0.15 -0.7 965,982 + CSW01_19190 0.22 +1.1 966,032 + CSW01_19190 0.33 +0.2 966,054 + CSW01_19190 0.38 -1.5 966,054 + CSW01_19190 0.38 -1.1 966,054 + CSW01_19190 0.38 +1.1 966,054 + CSW01_19190 0.38 -2.8 966,062 - CSW01_19190 0.40 -1.3 966,065 + CSW01_19190 0.40 -1.2 966,065 + CSW01_19190 0.40 -3.9 966,333 - -0.5 966,390 + -0.5 966,415 + -1.8 966,567 + CSW01_19195 0.17 -2.8 966,596 - CSW01_19195 0.20 -1.8 966,596 - CSW01_19195 0.20 -0.2 966,608 - CSW01_19195 0.22 +0.4 966,781 + CSW01_19195 0.40 -1.1 966,841 + CSW01_19195 0.47 -1.5 966,913 - CSW01_19195 0.55 +0.1 966,962 + CSW01_19195 0.60 -3.0 966,962 + CSW01_19195 0.60 +0.2 966,970 - CSW01_19195 0.61 -1.8 966,970 - CSW01_19195 0.61 -0.6 966,988 + CSW01_19195 0.63 -0.8 967,015 - CSW01_19195 0.66 -2.3 967,036 - CSW01_19195 0.68 -1.3 967,073 - CSW01_19195 0.72 -0.2 967,078 + CSW01_19195 0.73 -1.5 967,078 + CSW01_19195 0.73 +2.1 967,078 + CSW01_19195 0.73 -0.6 967,117 - CSW01_19195 0.77 +1.1 967,147 + CSW01_19195 0.80 -3.2 967,249 + -0.0 967,259 + -0.7 967,300 + -3.1
Or see this region's nucleotide sequence