Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18990

Experiment: ICP1_phage_23.5_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18985 and CSW01_18990 are separated by 214 nucleotidesCSW01_18990 and CSW01_18995 are separated by 203 nucleotidesCSW01_18995 and CSW01_19000 are separated by 28 nucleotides CSW01_18985: CSW01_18985 - methyl-accepting chemotaxis protein, at 918,085 to 919,770 _18985 CSW01_18990: CSW01_18990 - ATP-dependent protease, at 919,985 to 922,345 _18990 CSW01_18995: CSW01_18995 - hypothetical protein, at 922,549 to 923,043 _18995 CSW01_19000: CSW01_19000 - ABC transporter ATP-binding protein, at 923,072 to 924,691 _19000 Position (kb) 919 920 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 919.159 kb on + strand, within CSW01_18985at 919.159 kb on + strand, within CSW01_18985at 919.167 kb on - strand, within CSW01_18985at 919.167 kb on - strand, within CSW01_18985at 919.176 kb on + strand, within CSW01_18985at 919.184 kb on - strand, within CSW01_18985at 919.195 kb on + strand, within CSW01_18985at 919.291 kb on + strand, within CSW01_18985at 919.297 kb on + strand, within CSW01_18985at 919.300 kb on - strand, within CSW01_18985at 919.310 kb on + strand, within CSW01_18985at 919.310 kb on + strand, within CSW01_18985at 919.318 kb on - strand, within CSW01_18985at 919.318 kb on - strand, within CSW01_18985at 919.333 kb on - strand, within CSW01_18985at 919.345 kb on - strand, within CSW01_18985at 919.407 kb on + strand, within CSW01_18985at 919.415 kb on - strand, within CSW01_18985at 919.417 kb on - strand, within CSW01_18985at 919.422 kb on - strand, within CSW01_18985at 919.423 kb on + strand, within CSW01_18985at 919.474 kb on + strand, within CSW01_18985at 919.551 kb on + strand, within CSW01_18985at 919.582 kb on - strand, within CSW01_18985at 919.615 kb on - strandat 919.615 kb on - strandat 919.622 kb on - strandat 919.629 kb on - strandat 919.666 kb on + strandat 919.674 kb on - strandat 919.711 kb on - strandat 919.999 kb on - strandat 920.003 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.201 kb on + strandat 920.214 kb on - strandat 920.242 kb on + strand, within CSW01_18990at 920.242 kb on + strand, within CSW01_18990at 920.274 kb on - strand, within CSW01_18990at 920.318 kb on - strand, within CSW01_18990at 920.327 kb on + strand, within CSW01_18990at 920.370 kb on - strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.419 kb on + strand, within CSW01_18990at 920.419 kb on + strand, within CSW01_18990at 920.426 kb on + strand, within CSW01_18990at 920.426 kb on + strand, within CSW01_18990at 920.426 kb on + strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.434 kb on - strand, within CSW01_18990at 920.434 kb on - strand, within CSW01_18990at 920.434 kb on - strand, within CSW01_18990at 920.480 kb on - strand, within CSW01_18990at 920.485 kb on - strand, within CSW01_18990at 920.560 kb on - strand, within CSW01_18990at 920.645 kb on - strand, within CSW01_18990at 920.648 kb on + strand, within CSW01_18990at 920.667 kb on + strand, within CSW01_18990at 920.675 kb on - strand, within CSW01_18990at 920.704 kb on - strand, within CSW01_18990at 920.713 kb on + strand, within CSW01_18990at 920.713 kb on + strand, within CSW01_18990at 920.721 kb on - strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.742 kb on - strand, within CSW01_18990at 920.742 kb on - strand, within CSW01_18990at 920.852 kb on - strand, within CSW01_18990at 920.868 kb on + strand, within CSW01_18990at 920.977 kb on - strand, within CSW01_18990at 920.977 kb on - strand, within CSW01_18990at 921.011 kb on + strand, within CSW01_18990at 921.072 kb on + strand, within CSW01_18990at 921.080 kb on - strand, within CSW01_18990at 921.118 kb on + strand, within CSW01_18990at 921.118 kb on + strand, within CSW01_18990at 921.138 kb on + strand, within CSW01_18990at 921.179 kb on + strand, within CSW01_18990at 921.211 kb on - strand, within CSW01_18990at 921.227 kb on - strand, within CSW01_18990at 921.257 kb on - strand, within CSW01_18990at 921.257 kb on - strand, within CSW01_18990at 921.360 kb on + strand, within CSW01_18990at 921.362 kb on + strand, within CSW01_18990at 921.377 kb on + strand, within CSW01_18990at 921.385 kb on - strand, within CSW01_18990at 921.406 kb on - strand, within CSW01_18990at 921.479 kb on + strand, within CSW01_18990at 921.479 kb on + strand, within CSW01_18990at 921.613 kb on + strand, within CSW01_18990at 921.613 kb on + strand, within CSW01_18990at 921.669 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.760 kb on + strand, within CSW01_18990at 921.760 kb on + strand, within CSW01_18990at 921.769 kb on + strand, within CSW01_18990at 921.818 kb on + strand, within CSW01_18990at 921.835 kb on - strand, within CSW01_18990at 921.966 kb on + strand, within CSW01_18990at 921.971 kb on + strand, within CSW01_18990at 921.974 kb on - strand, within CSW01_18990at 921.974 kb on - strand, within CSW01_18990at 921.989 kb on - strand, within CSW01_18990at 922.034 kb on + strand, within CSW01_18990at 922.042 kb on + strand, within CSW01_18990at 922.085 kb on + strand, within CSW01_18990at 922.085 kb on + strand, within CSW01_18990at 922.178 kb on + strandat 922.212 kb on - strandat 922.245 kb on - strandat 922.258 kb on + strandat 922.275 kb on + strandat 922.283 kb on - strandat 922.308 kb on + strandat 922.318 kb on + strandat 922.326 kb on - strandat 922.347 kb on + strandat 922.352 kb on + strandat 922.584 kb on + strandat 922.606 kb on + strand, within CSW01_18995at 922.642 kb on + strand, within CSW01_18995at 922.642 kb on + strand, within CSW01_18995at 922.650 kb on + strand, within CSW01_18995at 922.650 kb on - strand, within CSW01_18995at 922.650 kb on - strand, within CSW01_18995at 922.665 kb on + strand, within CSW01_18995at 922.681 kb on - strand, within CSW01_18995at 922.692 kb on + strand, within CSW01_18995at 922.726 kb on + strand, within CSW01_18995at 922.790 kb on + strand, within CSW01_18995at 922.790 kb on + strand, within CSW01_18995at 922.798 kb on - strand, within CSW01_18995at 922.809 kb on + strand, within CSW01_18995at 922.809 kb on + strand, within CSW01_18995at 922.863 kb on + strand, within CSW01_18995at 922.874 kb on + strand, within CSW01_18995at 922.927 kb on + strand, within CSW01_18995at 922.932 kb on + strand, within CSW01_18995at 922.932 kb on + strand, within CSW01_18995at 922.938 kb on - strand, within CSW01_18995at 922.940 kb on - strand, within CSW01_18995at 922.993 kb on - strand, within CSW01_18995at 922.993 kb on - strand, within CSW01_18995at 923.011 kb on + strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.024 kb on + strandat 923.168 kb on - strandat 923.211 kb on - strandat 923.279 kb on - strand, within CSW01_19000at 923.298 kb on + strand, within CSW01_19000at 923.305 kb on - strand, within CSW01_19000at 923.319 kb on - strand, within CSW01_19000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
remove
919,159 + CSW01_18985 0.64 -0.1
919,159 + CSW01_18985 0.64 +1.8
919,167 - CSW01_18985 0.64 +0.6
919,167 - CSW01_18985 0.64 +2.3
919,176 + CSW01_18985 0.65 +0.4
919,184 - CSW01_18985 0.65 +1.2
919,195 + CSW01_18985 0.66 +0.7
919,291 + CSW01_18985 0.72 +0.3
919,297 + CSW01_18985 0.72 -0.8
919,300 - CSW01_18985 0.72 -0.7
919,310 + CSW01_18985 0.73 -1.6
919,310 + CSW01_18985 0.73 +0.2
919,318 - CSW01_18985 0.73 +0.1
919,318 - CSW01_18985 0.73 +0.0
919,333 - CSW01_18985 0.74 -2.2
919,345 - CSW01_18985 0.75 -0.6
919,407 + CSW01_18985 0.78 +1.7
919,415 - CSW01_18985 0.79 +1.6
919,417 - CSW01_18985 0.79 -0.4
919,422 - CSW01_18985 0.79 -0.4
919,423 + CSW01_18985 0.79 +1.8
919,474 + CSW01_18985 0.82 +0.5
919,551 + CSW01_18985 0.87 -0.3
919,582 - CSW01_18985 0.89 +1.3
919,615 - -0.2
919,615 - -0.8
919,622 - +1.6
919,629 - +1.4
919,666 + +1.4
919,674 - +0.9
919,711 - -2.3
919,999 - +0.6
920,003 + +0.2
920,170 + -1.8
920,170 + +0.9
920,170 + +0.4
920,170 + +0.6
920,170 + +0.6
920,170 + -1.1
920,170 + -0.0
920,170 + +0.1
920,170 + +1.5
920,170 + +0.6
920,170 + +1.3
920,178 - -0.7
920,178 - -1.6
920,178 - +1.2
920,178 - -0.0
920,178 - -1.8
920,178 - +0.6
920,178 - +0.0
920,178 - +1.7
920,201 + -0.1
920,214 - +0.5
920,242 + CSW01_18990 0.11 +0.6
920,242 + CSW01_18990 0.11 +0.2
920,274 - CSW01_18990 0.12 -1.8
920,318 - CSW01_18990 0.14 +0.9
920,327 + CSW01_18990 0.14 +0.9
920,370 - CSW01_18990 0.16 -0.0
920,409 + CSW01_18990 0.18 -3.6
920,409 + CSW01_18990 0.18 -0.0
920,409 + CSW01_18990 0.18 -0.7
920,409 + CSW01_18990 0.18 -1.1
920,417 - CSW01_18990 0.18 -2.8
920,417 - CSW01_18990 0.18 -1.0
920,417 - CSW01_18990 0.18 -0.4
920,417 - CSW01_18990 0.18 -2.1
920,417 - CSW01_18990 0.18 -1.4
920,419 + CSW01_18990 0.18 -0.1
920,419 + CSW01_18990 0.18 -0.1
920,426 + CSW01_18990 0.19 +0.1
920,426 + CSW01_18990 0.19 +0.6
920,426 + CSW01_18990 0.19 -1.5
920,427 - CSW01_18990 0.19 +0.5
920,427 - CSW01_18990 0.19 -3.0
920,427 - CSW01_18990 0.19 +0.6
920,427 - CSW01_18990 0.19 -0.8
920,427 - CSW01_18990 0.19 -3.0
920,427 - CSW01_18990 0.19 +0.1
920,427 - CSW01_18990 0.19 -2.6
920,427 - CSW01_18990 0.19 -1.9
920,427 - CSW01_18990 0.19 -0.2
920,434 - CSW01_18990 0.19 -1.6
920,434 - CSW01_18990 0.19 -0.3
920,434 - CSW01_18990 0.19 +0.4
920,480 - CSW01_18990 0.21 -0.3
920,485 - CSW01_18990 0.21 -2.3
920,560 - CSW01_18990 0.24 -0.8
920,645 - CSW01_18990 0.28 -0.1
920,648 + CSW01_18990 0.28 +1.4
920,667 + CSW01_18990 0.29 -0.4
920,675 - CSW01_18990 0.29 +1.1
920,704 - CSW01_18990 0.30 +1.2
920,713 + CSW01_18990 0.31 -2.6
920,713 + CSW01_18990 0.31 -1.4
920,721 - CSW01_18990 0.31 -1.7
920,734 + CSW01_18990 0.32 -2.0
920,734 + CSW01_18990 0.32 +0.2
920,734 + CSW01_18990 0.32 -0.1
920,734 + CSW01_18990 0.32 +1.2
920,734 + CSW01_18990 0.32 -0.8
920,734 + CSW01_18990 0.32 +0.6
920,742 - CSW01_18990 0.32 +0.6
920,742 - CSW01_18990 0.32 +0.8
920,852 - CSW01_18990 0.37 +0.0
920,868 + CSW01_18990 0.37 -2.9
920,977 - CSW01_18990 0.42 +0.7
920,977 - CSW01_18990 0.42 -0.2
921,011 + CSW01_18990 0.43 +0.0
921,072 + CSW01_18990 0.46 +0.4
921,080 - CSW01_18990 0.46 +0.8
921,118 + CSW01_18990 0.48 -0.6
921,118 + CSW01_18990 0.48 -0.0
921,138 + CSW01_18990 0.49 +0.8
921,179 + CSW01_18990 0.51 -1.0
921,211 - CSW01_18990 0.52 +0.9
921,227 - CSW01_18990 0.53 +0.2
921,257 - CSW01_18990 0.54 +1.2
921,257 - CSW01_18990 0.54 +0.6
921,360 + CSW01_18990 0.58 +0.0
921,362 + CSW01_18990 0.58 -1.3
921,377 + CSW01_18990 0.59 -2.0
921,385 - CSW01_18990 0.59 -2.7
921,406 - CSW01_18990 0.60 +1.6
921,479 + CSW01_18990 0.63 +0.6
921,479 + CSW01_18990 0.63 -0.6
921,613 + CSW01_18990 0.69 +0.7
921,613 + CSW01_18990 0.69 -0.5
921,669 + CSW01_18990 0.71 -0.5
921,747 + CSW01_18990 0.75 -0.6
921,747 + CSW01_18990 0.75 +2.1
921,747 + CSW01_18990 0.75 -1.2
921,747 + CSW01_18990 0.75 -0.9
921,747 + CSW01_18990 0.75 -1.6
921,747 + CSW01_18990 0.75 -0.2
921,747 + CSW01_18990 0.75 -2.4
921,747 + CSW01_18990 0.75 +0.6
921,747 + CSW01_18990 0.75 -1.6
921,747 + CSW01_18990 0.75 -0.1
921,747 + CSW01_18990 0.75 +0.1
921,747 + CSW01_18990 0.75 -1.4
921,747 + CSW01_18990 0.75 -2.1
921,747 + CSW01_18990 0.75 +2.1
921,755 - CSW01_18990 0.75 -2.3
921,755 - CSW01_18990 0.75 +0.7
921,755 - CSW01_18990 0.75 -2.1
921,755 - CSW01_18990 0.75 +0.8
921,755 - CSW01_18990 0.75 +0.4
921,755 - CSW01_18990 0.75 -1.5
921,755 - CSW01_18990 0.75 +1.1
921,755 - CSW01_18990 0.75 +0.0
921,755 - CSW01_18990 0.75 -1.1
921,755 - CSW01_18990 0.75 -3.7
921,755 - CSW01_18990 0.75 -0.0
921,755 - CSW01_18990 0.75 -3.1
921,755 - CSW01_18990 0.75 +0.1
921,760 + CSW01_18990 0.75 -1.0
921,760 + CSW01_18990 0.75 +1.5
921,769 + CSW01_18990 0.76 +0.5
921,818 + CSW01_18990 0.78 -0.3
921,835 - CSW01_18990 0.78 -2.7
921,966 + CSW01_18990 0.84 +1.3
921,971 + CSW01_18990 0.84 +0.4
921,974 - CSW01_18990 0.84 -2.3
921,974 - CSW01_18990 0.84 +0.5
921,989 - CSW01_18990 0.85 +1.1
922,034 + CSW01_18990 0.87 -0.8
922,042 + CSW01_18990 0.87 -2.2
922,085 + CSW01_18990 0.89 +0.2
922,085 + CSW01_18990 0.89 -0.1
922,178 + +0.4
922,212 - -1.4
922,245 - -0.5
922,258 + +0.4
922,275 + +0.7
922,283 - +0.0
922,308 + -0.8
922,318 + +0.9
922,326 - -3.2
922,347 + -2.1
922,352 + -0.8
922,584 + +1.4
922,606 + CSW01_18995 0.12 -0.2
922,642 + CSW01_18995 0.19 -1.6
922,642 + CSW01_18995 0.19 -0.5
922,650 + CSW01_18995 0.20 +1.5
922,650 - CSW01_18995 0.20 +0.8
922,650 - CSW01_18995 0.20 +1.2
922,665 + CSW01_18995 0.23 +0.3
922,681 - CSW01_18995 0.27 +0.5
922,692 + CSW01_18995 0.29 +0.7
922,726 + CSW01_18995 0.36 +0.2
922,790 + CSW01_18995 0.49 +0.1
922,790 + CSW01_18995 0.49 -0.9
922,798 - CSW01_18995 0.50 -2.0
922,809 + CSW01_18995 0.53 -1.1
922,809 + CSW01_18995 0.53 +1.2
922,863 + CSW01_18995 0.63 -0.2
922,874 + CSW01_18995 0.66 +2.1
922,927 + CSW01_18995 0.76 -1.1
922,932 + CSW01_18995 0.77 +1.7
922,932 + CSW01_18995 0.77 -1.8
922,938 - CSW01_18995 0.79 +0.7
922,940 - CSW01_18995 0.79 -0.3
922,993 - CSW01_18995 0.90 +0.5
922,993 - CSW01_18995 0.90 +2.3
923,011 + +0.1
923,019 - +0.4
923,019 - +0.5
923,019 - +0.4
923,019 - -1.8
923,024 + +0.3
923,168 - -1.8
923,211 - -1.0
923,279 - CSW01_19000 0.13 +1.1
923,298 + CSW01_19000 0.14 -1.3
923,305 - CSW01_19000 0.14 -1.6
923,319 - CSW01_19000 0.15 -3.4

Or see this region's nucleotide sequence