Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18965

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18960 and CSW01_18965 are separated by 137 nucleotidesCSW01_18965 and CSW01_18970 are separated by 511 nucleotidesCSW01_18970 and CSW01_18975 are separated by 8 nucleotides CSW01_18960: CSW01_18960 - quercetin 2,3-dioxygenase, at 914,257 to 915,105 _18960 CSW01_18965: CSW01_18965 - DUF1255 domain-containing protein, at 915,243 to 915,557 _18965 CSW01_18970: CSW01_18970 - DUF2850 domain-containing protein, at 916,069 to 916,509 _18970 CSW01_18975: CSW01_18975 - MFS transporter, at 916,518 to 917,822 _18975 Position (kb) 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 914.245 kb on - strandat 914.246 kb on + strandat 914.261 kb on - strandat 914.268 kb on - strandat 914.306 kb on - strandat 914.306 kb on - strandat 914.431 kb on + strand, within CSW01_18960at 914.563 kb on - strand, within CSW01_18960at 914.565 kb on - strand, within CSW01_18960at 914.615 kb on + strand, within CSW01_18960at 914.623 kb on - strand, within CSW01_18960at 914.707 kb on + strand, within CSW01_18960at 914.707 kb on + strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.739 kb on + strand, within CSW01_18960at 914.746 kb on - strand, within CSW01_18960at 914.774 kb on + strand, within CSW01_18960at 914.777 kb on - strand, within CSW01_18960at 914.782 kb on - strand, within CSW01_18960at 914.891 kb on + strand, within CSW01_18960at 914.907 kb on - strand, within CSW01_18960at 914.909 kb on + strand, within CSW01_18960at 914.912 kb on - strand, within CSW01_18960at 914.941 kb on + strand, within CSW01_18960at 914.944 kb on - strand, within CSW01_18960at 914.954 kb on + strand, within CSW01_18960at 914.962 kb on + strand, within CSW01_18960at 915.315 kb on - strand, within CSW01_18965at 915.341 kb on + strand, within CSW01_18965at 915.369 kb on + strand, within CSW01_18965at 915.385 kb on + strand, within CSW01_18965at 915.385 kb on + strand, within CSW01_18965at 915.393 kb on - strand, within CSW01_18965at 915.393 kb on - strand, within CSW01_18965at 915.429 kb on + strand, within CSW01_18965at 915.429 kb on + strand, within CSW01_18965at 915.454 kb on + strand, within CSW01_18965at 915.462 kb on + strand, within CSW01_18965at 915.462 kb on - strand, within CSW01_18965at 915.499 kb on - strand, within CSW01_18965at 915.554 kb on - strandat 915.586 kb on - strandat 915.590 kb on + strandat 915.632 kb on + strandat 915.646 kb on + strandat 915.654 kb on - strandat 915.654 kb on - strandat 915.672 kb on - strandat 915.673 kb on - strandat 915.781 kb on - strandat 915.803 kb on - strandat 915.875 kb on - strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.012 kb on - strandat 916.141 kb on - strand, within CSW01_18970at 916.156 kb on + strand, within CSW01_18970at 916.392 kb on + strand, within CSW01_18970at 916.392 kb on + strand, within CSW01_18970at 916.397 kb on + strand, within CSW01_18970at 916.397 kb on + strand, within CSW01_18970at 916.400 kb on - strand, within CSW01_18970at 916.400 kb on - strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.467 kb on + strandat 916.467 kb on + strandat 916.467 kb on + strandat 916.467 kb on + strandat 916.475 kb on - strandat 916.475 kb on - strandat 916.475 kb on - strandat 916.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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914,245 - +0.6
914,246 + -1.3
914,261 - +1.1
914,268 - +1.1
914,306 - +0.0
914,306 - +0.3
914,431 + CSW01_18960 0.20 +1.3
914,563 - CSW01_18960 0.36 -0.5
914,565 - CSW01_18960 0.36 -2.0
914,615 + CSW01_18960 0.42 +0.2
914,623 - CSW01_18960 0.43 -0.1
914,707 + CSW01_18960 0.53 +3.7
914,707 + CSW01_18960 0.53 -1.0
914,715 - CSW01_18960 0.54 -0.1
914,715 - CSW01_18960 0.54 -1.2
914,715 - CSW01_18960 0.54 -3.3
914,739 + CSW01_18960 0.57 -0.5
914,746 - CSW01_18960 0.58 -0.4
914,774 + CSW01_18960 0.61 -0.6
914,777 - CSW01_18960 0.61 -2.7
914,782 - CSW01_18960 0.62 -0.3
914,891 + CSW01_18960 0.75 -0.1
914,907 - CSW01_18960 0.77 +1.4
914,909 + CSW01_18960 0.77 -0.3
914,912 - CSW01_18960 0.77 -0.6
914,941 + CSW01_18960 0.81 -0.2
914,944 - CSW01_18960 0.81 +1.2
914,954 + CSW01_18960 0.82 +0.9
914,962 + CSW01_18960 0.83 +0.5
915,315 - CSW01_18965 0.23 +0.3
915,341 + CSW01_18965 0.31 -0.6
915,369 + CSW01_18965 0.40 -1.5
915,385 + CSW01_18965 0.45 -0.9
915,385 + CSW01_18965 0.45 -2.6
915,393 - CSW01_18965 0.48 -1.6
915,393 - CSW01_18965 0.48 -1.3
915,429 + CSW01_18965 0.59 -3.4
915,429 + CSW01_18965 0.59 -1.0
915,454 + CSW01_18965 0.67 +0.3
915,462 + CSW01_18965 0.70 +0.7
915,462 - CSW01_18965 0.70 -2.4
915,499 - CSW01_18965 0.81 -0.9
915,554 - -0.7
915,586 - -0.8
915,590 + -0.4
915,632 + +0.3
915,646 + +0.1
915,654 - -1.0
915,654 - -3.1
915,672 - +0.2
915,673 - -0.4
915,781 - -1.4
915,803 - +0.4
915,875 - -0.5
915,999 + -0.0
915,999 + -0.4
915,999 + -0.6
915,999 + -1.2
915,999 + +0.8
916,007 - +0.6
916,007 - +0.8
916,007 - -1.6
916,007 - -0.7
916,007 - -0.8
916,012 - +0.2
916,141 - CSW01_18970 0.16 +0.9
916,156 + CSW01_18970 0.20 -0.9
916,392 + CSW01_18970 0.73 -0.6
916,392 + CSW01_18970 0.73 -0.7
916,397 + CSW01_18970 0.74 -2.3
916,397 + CSW01_18970 0.74 -0.9
916,400 - CSW01_18970 0.75 -1.4
916,400 - CSW01_18970 0.75 -2.2
916,424 + CSW01_18970 0.80 -2.3
916,424 + CSW01_18970 0.80 +0.1
916,424 + CSW01_18970 0.80 +0.4
916,432 - CSW01_18970 0.82 -0.8
916,432 - CSW01_18970 0.82 -0.9
916,432 - CSW01_18970 0.82 +1.9
916,467 + -2.4
916,467 + -0.4
916,467 + +0.3
916,467 + -1.1
916,475 - +0.0
916,475 - +0.2
916,475 - -1.3
916,526 + -0.1

Or see this region's nucleotide sequence