Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18730

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18725 and CSW01_18730 are separated by 498 nucleotidesCSW01_18730 and CSW01_18735 are separated by 202 nucleotidesCSW01_18735 and CSW01_18740 are separated by 60 nucleotides CSW01_18725: CSW01_18725 - TetR/AcrR family transcriptional regulator, at 868,525 to 869,010 _18725 CSW01_18730: CSW01_18730 - DUF406 domain-containing protein, at 869,509 to 869,811 _18730 CSW01_18735: CSW01_18735 - hypothetical protein, at 870,014 to 870,613 _18735 CSW01_18740: CSW01_18740 - acyltransferase, at 870,674 to 871,792 _18740 Position (kb) 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 868.906 kb on - strand, within CSW01_18725at 868.942 kb on + strand, within CSW01_18725at 868.950 kb on - strand, within CSW01_18725at 869.072 kb on + strandat 869.088 kb on + strandat 869.119 kb on + strandat 869.119 kb on + strandat 869.127 kb on - strandat 869.161 kb on - strandat 869.190 kb on + strandat 869.598 kb on - strand, within CSW01_18730at 869.697 kb on + strand, within CSW01_18730at 869.697 kb on - strand, within CSW01_18730at 869.952 kb on + strandat 869.963 kb on + strandat 869.970 kb on + strandat 870.006 kb on - strandat 870.007 kb on - strandat 870.087 kb on + strand, within CSW01_18735at 870.092 kb on + strand, within CSW01_18735at 870.092 kb on + strand, within CSW01_18735at 870.100 kb on - strand, within CSW01_18735at 870.120 kb on + strand, within CSW01_18735at 870.120 kb on + strand, within CSW01_18735at 870.128 kb on - strand, within CSW01_18735at 870.128 kb on - strand, within CSW01_18735at 870.139 kb on + strand, within CSW01_18735at 870.139 kb on + strand, within CSW01_18735at 870.147 kb on - strand, within CSW01_18735at 870.225 kb on + strand, within CSW01_18735at 870.225 kb on + strand, within CSW01_18735at 870.258 kb on - strand, within CSW01_18735at 870.342 kb on + strand, within CSW01_18735at 870.342 kb on + strand, within CSW01_18735at 870.350 kb on - strand, within CSW01_18735at 870.406 kb on - strand, within CSW01_18735at 870.430 kb on + strand, within CSW01_18735at 870.435 kb on + strand, within CSW01_18735at 870.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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868,906 - CSW01_18725 0.78 +2.2
868,942 + CSW01_18725 0.86 +0.6
868,950 - CSW01_18725 0.87 +1.3
869,072 + -0.2
869,088 + +0.8
869,119 + -1.2
869,119 + +1.0
869,127 - -0.1
869,161 - -0.9
869,190 + +1.5
869,598 - CSW01_18730 0.29 -3.1
869,697 + CSW01_18730 0.62 -1.0
869,697 - CSW01_18730 0.62 -2.2
869,952 + -3.3
869,963 + +0.7
869,970 + +1.6
870,006 - -0.2
870,007 - -1.2
870,087 + CSW01_18735 0.12 -1.8
870,092 + CSW01_18735 0.13 -0.8
870,092 + CSW01_18735 0.13 -0.3
870,100 - CSW01_18735 0.14 -1.4
870,120 + CSW01_18735 0.18 +1.9
870,120 + CSW01_18735 0.18 -1.2
870,128 - CSW01_18735 0.19 -1.8
870,128 - CSW01_18735 0.19 -3.0
870,139 + CSW01_18735 0.21 +0.2
870,139 + CSW01_18735 0.21 -0.0
870,147 - CSW01_18735 0.22 -2.0
870,225 + CSW01_18735 0.35 -1.8
870,225 + CSW01_18735 0.35 +0.3
870,258 - CSW01_18735 0.41 +0.7
870,342 + CSW01_18735 0.55 -1.3
870,342 + CSW01_18735 0.55 -0.2
870,350 - CSW01_18735 0.56 -2.8
870,406 - CSW01_18735 0.65 +0.7
870,430 + CSW01_18735 0.69 -2.3
870,435 + CSW01_18735 0.70 +0.9
870,582 + +1.2

Or see this region's nucleotide sequence