Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18510 and CSW01_18515 are separated by 207 nucleotides CSW01_18515 and CSW01_18520 are separated by 299 nucleotides
CSW01_18510: CSW01_18510 - D-serine dehydratase, at 826,120 to 827,445
_18510
CSW01_18515: CSW01_18515 - DNA-binding transcriptional regulator DsdC, at 827,653 to 828,597
_18515
CSW01_18520: CSW01_18520 - linear amide C-N hydrolase, at 828,897 to 829,973
_18520
Position (kb) 827
828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 826.694 kb on - strand, within CSW01_18510 at 826.785 kb on - strand, within CSW01_18510 at 826.804 kb on - strand, within CSW01_18510 at 826.804 kb on - strand, within CSW01_18510 at 826.835 kb on - strand, within CSW01_18510 at 826.876 kb on + strand, within CSW01_18510 at 826.953 kb on + strand, within CSW01_18510 at 826.959 kb on - strand, within CSW01_18510 at 826.961 kb on - strand, within CSW01_18510 at 827.070 kb on - strand, within CSW01_18510 at 827.078 kb on - strand, within CSW01_18510 at 827.099 kb on - strand, within CSW01_18510 at 827.099 kb on - strand, within CSW01_18510 at 827.148 kb on + strand, within CSW01_18510 at 827.148 kb on + strand, within CSW01_18510 at 827.148 kb on + strand, within CSW01_18510 at 827.188 kb on - strand, within CSW01_18510 at 827.204 kb on + strand, within CSW01_18510 at 827.212 kb on - strand, within CSW01_18510 at 827.268 kb on - strand, within CSW01_18510 at 827.281 kb on + strand, within CSW01_18510 at 827.281 kb on + strand, within CSW01_18510 at 827.304 kb on + strand, within CSW01_18510 at 827.316 kb on + strand at 827.326 kb on + strand at 827.326 kb on + strand at 827.344 kb on - strand at 827.383 kb on - strand at 827.402 kb on + strand at 827.424 kb on + strand at 827.424 kb on + strand at 827.429 kb on + strand at 827.429 kb on + strand at 827.429 kb on + strand at 827.432 kb on - strand at 827.432 kb on - strand at 827.432 kb on - strand at 827.470 kb on - strand at 827.495 kb on - strand at 827.495 kb on - strand at 827.571 kb on - strand at 827.582 kb on + strand at 827.595 kb on - strand at 827.612 kb on - strand at 827.612 kb on - strand at 827.614 kb on + strand at 827.621 kb on - strand at 827.621 kb on - strand at 827.626 kb on + strand at 827.626 kb on + strand at 827.638 kb on + strand at 827.639 kb on + strand at 827.643 kb on + strand at 827.643 kb on + strand at 827.643 kb on + strand at 827.643 kb on + strand at 827.643 kb on + strand at 827.645 kb on + strand at 827.646 kb on - strand at 827.651 kb on - strand at 827.661 kb on - strand at 827.664 kb on + strand at 827.665 kb on + strand at 827.672 kb on - strand at 827.672 kb on - strand at 827.672 kb on - strand at 827.672 kb on - strand at 827.672 kb on - strand at 827.672 kb on - strand at 827.672 kb on - strand at 827.731 kb on - strand at 827.742 kb on + strand at 827.772 kb on + strand, within CSW01_18515 at 827.772 kb on + strand, within CSW01_18515 at 827.773 kb on + strand, within CSW01_18515 at 827.773 kb on + strand, within CSW01_18515 at 827.777 kb on + strand, within CSW01_18515 at 827.777 kb on + strand, within CSW01_18515 at 827.779 kb on + strand, within CSW01_18515 at 827.779 kb on + strand, within CSW01_18515 at 827.785 kb on - strand, within CSW01_18515 at 827.785 kb on - strand, within CSW01_18515 at 827.785 kb on - strand, within CSW01_18515 at 827.959 kb on + strand, within CSW01_18515 at 827.993 kb on + strand, within CSW01_18515 at 828.003 kb on + strand, within CSW01_18515 at 828.011 kb on - strand, within CSW01_18515 at 828.011 kb on - strand, within CSW01_18515 at 828.013 kb on - strand, within CSW01_18515 at 828.029 kb on + strand, within CSW01_18515 at 828.037 kb on - strand, within CSW01_18515 at 828.037 kb on - strand, within CSW01_18515 at 828.037 kb on - strand, within CSW01_18515 at 828.039 kb on + strand, within CSW01_18515 at 828.047 kb on - strand, within CSW01_18515 at 828.132 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.194 kb on + strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.202 kb on - strand, within CSW01_18515 at 828.234 kb on + strand, within CSW01_18515 at 828.241 kb on - strand, within CSW01_18515 at 828.248 kb on - strand, within CSW01_18515 at 828.249 kb on + strand, within CSW01_18515 at 828.249 kb on - strand, within CSW01_18515 at 828.251 kb on + strand, within CSW01_18515 at 828.251 kb on + strand, within CSW01_18515 at 828.259 kb on - strand, within CSW01_18515 at 828.261 kb on - strand, within CSW01_18515 at 828.311 kb on - strand, within CSW01_18515 at 828.315 kb on + strand, within CSW01_18515 at 828.320 kb on + strand, within CSW01_18515 at 828.361 kb on + strand, within CSW01_18515 at 828.429 kb on - strand, within CSW01_18515 at 828.452 kb on + strand, within CSW01_18515 at 828.458 kb on - strand, within CSW01_18515 at 828.471 kb on + strand, within CSW01_18515 at 828.473 kb on - strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.477 kb on + strand, within CSW01_18515 at 828.485 kb on - strand, within CSW01_18515 at 828.485 kb on - strand, within CSW01_18515 at 828.485 kb on - strand, within CSW01_18515 at 828.485 kb on - strand, within CSW01_18515 at 828.485 kb on - strand, within CSW01_18515 at 828.681 kb on - strand at 828.683 kb on + strand at 828.683 kb on + strand at 828.691 kb on + strand at 828.691 kb on - strand at 828.691 kb on - strand at 828.693 kb on + strand at 828.693 kb on + strand at 828.693 kb on + strand at 828.698 kb on + strand at 828.701 kb on - strand at 828.701 kb on - strand at 828.701 kb on - strand at 828.701 kb on - strand at 828.701 kb on - strand at 828.703 kb on + strand at 828.706 kb on - strand at 828.776 kb on + strand at 828.797 kb on + strand at 828.805 kb on - strand at 828.815 kb on + strand at 828.815 kb on + strand at 828.816 kb on + strand at 828.823 kb on - strand at 828.859 kb on + strand at 828.867 kb on + strand at 828.919 kb on - strand at 828.983 kb on - strand at 828.986 kb on + strand at 828.995 kb on - strand at 828.995 kb on - strand at 829.057 kb on + strand, within CSW01_18520 at 829.058 kb on + strand, within CSW01_18520 at 829.175 kb on + strand, within CSW01_18520 at 829.237 kb on + strand, within CSW01_18520 at 829.237 kb on + strand, within CSW01_18520 at 829.273 kb on - strand, within CSW01_18520 at 829.287 kb on - strand, within CSW01_18520 at 829.287 kb on - strand, within CSW01_18520 at 829.318 kb on - strand, within CSW01_18520 at 829.332 kb on + strand, within CSW01_18520 at 829.341 kb on - strand, within CSW01_18520 at 829.366 kb on - strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.413 kb on + strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.421 kb on - strand, within CSW01_18520 at 829.502 kb on + strand, within CSW01_18520 at 829.502 kb on + strand, within CSW01_18520 at 829.508 kb on - strand, within CSW01_18520 at 829.510 kb on - strand, within CSW01_18520 at 829.510 kb on - strand, within CSW01_18520 at 829.517 kb on - strand, within CSW01_18520 at 829.548 kb on + strand, within CSW01_18520
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 826,694 - CSW01_18510 0.43 -0.6 826,785 - CSW01_18510 0.50 -1.5 826,804 - CSW01_18510 0.52 +0.6 826,804 - CSW01_18510 0.52 +1.1 826,835 - CSW01_18510 0.54 -1.9 826,876 + CSW01_18510 0.57 +0.6 826,953 + CSW01_18510 0.63 -0.4 826,959 - CSW01_18510 0.63 +1.6 826,961 - CSW01_18510 0.63 +0.6 827,070 - CSW01_18510 0.72 -0.4 827,078 - CSW01_18510 0.72 -0.1 827,099 - CSW01_18510 0.74 -1.7 827,099 - CSW01_18510 0.74 -0.8 827,148 + CSW01_18510 0.78 -1.3 827,148 + CSW01_18510 0.78 +0.7 827,148 + CSW01_18510 0.78 -0.8 827,188 - CSW01_18510 0.81 +3.0 827,204 + CSW01_18510 0.82 +0.2 827,212 - CSW01_18510 0.82 +0.7 827,268 - CSW01_18510 0.87 -1.0 827,281 + CSW01_18510 0.88 +0.1 827,281 + CSW01_18510 0.88 +1.3 827,304 + CSW01_18510 0.89 +1.3 827,316 + -0.8 827,326 + +0.5 827,326 + -2.7 827,344 - +0.3 827,383 - -2.1 827,402 + +0.3 827,424 + -2.5 827,424 + -1.0 827,429 + -1.3 827,429 + -0.4 827,429 + -0.5 827,432 - +1.3 827,432 - +0.2 827,432 - +0.7 827,470 - +1.2 827,495 - -2.2 827,495 - -0.5 827,571 - -1.3 827,582 + +0.3 827,595 - +1.0 827,612 - -0.3 827,612 - -2.6 827,614 + +0.6 827,621 - -2.1 827,621 - +0.7 827,626 + -3.3 827,626 + -0.2 827,638 + -3.0 827,639 + -3.2 827,643 + -0.5 827,643 + +0.8 827,643 + +0.3 827,643 + +2.0 827,643 + +0.3 827,645 + -0.9 827,646 - -0.7 827,651 - -0.7 827,661 - -0.7 827,664 + -0.9 827,665 + +1.1 827,672 - +1.8 827,672 - +4.0 827,672 - +0.6 827,672 - -3.2 827,672 - -1.4 827,672 - -0.2 827,672 - +0.5 827,731 - +1.0 827,742 + +0.2 827,772 + CSW01_18515 0.13 +1.6 827,772 + CSW01_18515 0.13 -0.5 827,773 + CSW01_18515 0.13 -1.9 827,773 + CSW01_18515 0.13 +1.5 827,777 + CSW01_18515 0.13 -0.0 827,777 + CSW01_18515 0.13 +2.0 827,779 + CSW01_18515 0.13 +1.2 827,779 + CSW01_18515 0.13 +0.8 827,785 - CSW01_18515 0.14 -0.2 827,785 - CSW01_18515 0.14 -0.7 827,785 - CSW01_18515 0.14 -0.4 827,959 + CSW01_18515 0.32 +0.1 827,993 + CSW01_18515 0.36 +0.1 828,003 + CSW01_18515 0.37 +1.5 828,011 - CSW01_18515 0.38 +1.8 828,011 - CSW01_18515 0.38 -3.1 828,013 - CSW01_18515 0.38 -2.8 828,029 + CSW01_18515 0.40 -1.3 828,037 - CSW01_18515 0.41 +1.3 828,037 - CSW01_18515 0.41 +2.3 828,037 - CSW01_18515 0.41 -1.9 828,039 + CSW01_18515 0.41 +0.2 828,047 - CSW01_18515 0.42 +1.5 828,132 + CSW01_18515 0.51 +1.0 828,194 + CSW01_18515 0.57 -1.0 828,194 + CSW01_18515 0.57 -1.0 828,194 + CSW01_18515 0.57 -2.7 828,194 + CSW01_18515 0.57 -0.5 828,194 + CSW01_18515 0.57 +0.8 828,194 + CSW01_18515 0.57 +1.1 828,194 + CSW01_18515 0.57 -0.6 828,194 + CSW01_18515 0.57 -0.9 828,194 + CSW01_18515 0.57 -2.1 828,194 + CSW01_18515 0.57 -1.2 828,194 + CSW01_18515 0.57 +1.9 828,194 + CSW01_18515 0.57 -0.4 828,202 - CSW01_18515 0.58 +0.7 828,202 - CSW01_18515 0.58 +2.3 828,202 - CSW01_18515 0.58 +0.3 828,202 - CSW01_18515 0.58 +0.8 828,202 - CSW01_18515 0.58 +2.7 828,202 - CSW01_18515 0.58 +0.5 828,202 - CSW01_18515 0.58 +0.7 828,202 - CSW01_18515 0.58 -1.1 828,234 + CSW01_18515 0.61 -0.8 828,241 - CSW01_18515 0.62 +1.4 828,248 - CSW01_18515 0.63 +0.8 828,249 + CSW01_18515 0.63 +1.4 828,249 - CSW01_18515 0.63 -0.9 828,251 + CSW01_18515 0.63 +0.8 828,251 + CSW01_18515 0.63 -0.7 828,259 - CSW01_18515 0.64 +0.3 828,261 - CSW01_18515 0.64 -3.4 828,311 - CSW01_18515 0.70 +0.2 828,315 + CSW01_18515 0.70 +0.1 828,320 + CSW01_18515 0.71 +0.7 828,361 + CSW01_18515 0.75 -0.9 828,429 - CSW01_18515 0.82 +1.2 828,452 + CSW01_18515 0.85 -0.3 828,458 - CSW01_18515 0.85 +2.0 828,471 + CSW01_18515 0.87 +0.8 828,473 - CSW01_18515 0.87 -2.7 828,477 + CSW01_18515 0.87 -1.3 828,477 + CSW01_18515 0.87 +3.7 828,477 + CSW01_18515 0.87 -2.2 828,477 + CSW01_18515 0.87 +1.1 828,477 + CSW01_18515 0.87 +0.9 828,477 + CSW01_18515 0.87 +0.7 828,477 + CSW01_18515 0.87 +0.1 828,485 - CSW01_18515 0.88 -1.9 828,485 - CSW01_18515 0.88 +0.5 828,485 - CSW01_18515 0.88 -2.2 828,485 - CSW01_18515 0.88 +0.8 828,485 - CSW01_18515 0.88 -0.4 828,681 - -1.6 828,683 + +1.4 828,683 + -1.0 828,691 + -2.1 828,691 - -0.2 828,691 - +0.1 828,693 + +0.1 828,693 + -3.0 828,693 + +1.3 828,698 + +1.7 828,701 - -0.7 828,701 - -1.2 828,701 - -0.2 828,701 - -0.9 828,701 - -0.2 828,703 + -2.5 828,706 - +0.4 828,776 + -1.2 828,797 + -1.9 828,805 - -0.6 828,815 + +0.7 828,815 + -3.3 828,816 + +0.2 828,823 - -0.6 828,859 + +0.4 828,867 + +0.6 828,919 - +0.0 828,983 - -1.1 828,986 + -2.6 828,995 - +1.8 828,995 - -0.1 829,057 + CSW01_18520 0.15 -3.4 829,058 + CSW01_18520 0.15 -0.2 829,175 + CSW01_18520 0.26 +0.5 829,237 + CSW01_18520 0.32 -3.6 829,237 + CSW01_18520 0.32 +0.4 829,273 - CSW01_18520 0.35 +0.6 829,287 - CSW01_18520 0.36 +0.2 829,287 - CSW01_18520 0.36 +0.7 829,318 - CSW01_18520 0.39 -1.2 829,332 + CSW01_18520 0.40 +1.0 829,341 - CSW01_18520 0.41 -1.0 829,366 - CSW01_18520 0.44 -2.6 829,413 + CSW01_18520 0.48 +1.1 829,413 + CSW01_18520 0.48 +0.1 829,413 + CSW01_18520 0.48 +0.9 829,413 + CSW01_18520 0.48 +1.5 829,413 + CSW01_18520 0.48 -0.8 829,413 + CSW01_18520 0.48 +1.3 829,413 + CSW01_18520 0.48 +0.1 829,413 + CSW01_18520 0.48 -0.2 829,413 + CSW01_18520 0.48 +1.6 829,413 + CSW01_18520 0.48 +1.0 829,413 + CSW01_18520 0.48 -0.8 829,413 + CSW01_18520 0.48 -0.9 829,413 + CSW01_18520 0.48 +0.0 829,413 + CSW01_18520 0.48 -0.7 829,413 + CSW01_18520 0.48 -0.9 829,413 + CSW01_18520 0.48 -1.3 829,421 - CSW01_18520 0.49 -1.2 829,421 - CSW01_18520 0.49 -2.7 829,421 - CSW01_18520 0.49 +0.8 829,421 - CSW01_18520 0.49 +0.6 829,421 - CSW01_18520 0.49 -0.3 829,421 - CSW01_18520 0.49 +1.0 829,421 - CSW01_18520 0.49 +1.4 829,421 - CSW01_18520 0.49 +1.3 829,421 - CSW01_18520 0.49 -0.5 829,421 - CSW01_18520 0.49 +2.1 829,421 - CSW01_18520 0.49 +0.3 829,421 - CSW01_18520 0.49 +0.8 829,502 + CSW01_18520 0.56 +0.4 829,502 + CSW01_18520 0.56 -1.7 829,508 - CSW01_18520 0.57 +0.2 829,510 - CSW01_18520 0.57 -2.6 829,510 - CSW01_18520 0.57 +1.2 829,517 - CSW01_18520 0.58 -1.2 829,548 + CSW01_18520 0.60 -2.7
Or see this region's nucleotide sequence