Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18465 and CSW01_18470 are separated by 240 nucleotides CSW01_18470 and CSW01_18475 are separated by 530 nucleotides CSW01_18475 and CSW01_18480 are separated by 234 nucleotides
CSW01_18465: CSW01_18465 - outer membrane protein W, at 817,795 to 818,448
_18465
CSW01_18470: CSW01_18470 - hypothetical protein, at 818,689 to 818,871
_18470
CSW01_18475: CSW01_18475 - D-alanyl-D-alanine endopeptidase, at 819,402 to 820,352
_18475
CSW01_18480: CSW01_18480 - PLP-dependent aminotransferase family protein, at 820,587 to 822,008
_18480
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.404 kb on + strand at 818.404 kb on + strand at 818.412 kb on - strand at 818.412 kb on - strand at 818.412 kb on - strand at 818.412 kb on - strand at 818.475 kb on + strand at 818.502 kb on - strand at 818.629 kb on - strand at 818.738 kb on + strand, within CSW01_18470 at 818.829 kb on - strand, within CSW01_18470 at 818.867 kb on + strand at 818.873 kb on - strand at 819.025 kb on - strand at 819.078 kb on + strand at 819.213 kb on + strand at 819.220 kb on - strand at 819.223 kb on - strand at 819.260 kb on - strand at 819.267 kb on + strand at 819.301 kb on - strand at 819.325 kb on + strand at 819.325 kb on + strand at 819.325 kb on + strand at 819.333 kb on - strand at 819.333 kb on - strand at 819.333 kb on - strand at 819.440 kb on - strand at 819.557 kb on - strand, within CSW01_18475 at 819.757 kb on + strand, within CSW01_18475 at 819.781 kb on + strand, within CSW01_18475 at 819.789 kb on - strand, within CSW01_18475 at 819.846 kb on - strand, within CSW01_18475 at 819.846 kb on - strand, within CSW01_18475 at 819.859 kb on - strand, within CSW01_18475 at 820.137 kb on + strand, within CSW01_18475 at 820.171 kb on - strand, within CSW01_18475 at 820.171 kb on - strand, within CSW01_18475 at 820.219 kb on - strand, within CSW01_18475 at 820.265 kb on + strand at 820.273 kb on - strand at 820.320 kb on - strand at 820.382 kb on - strand at 820.513 kb on + strand at 820.559 kb on - strand at 820.726 kb on - strand at 820.926 kb on - strand, within CSW01_18480 at 820.927 kb on + strand, within CSW01_18480 at 820.969 kb on + strand, within CSW01_18480 at 820.977 kb on - strand, within CSW01_18480 at 821.222 kb on + strand, within CSW01_18480 at 821.230 kb on - strand, within CSW01_18480 at 821.280 kb on + strand, within CSW01_18480 at 821.280 kb on + strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 818,404 + +1.0 818,404 + +1.0 818,412 - +1.1 818,412 - +0.5 818,412 - +0.0 818,412 - +0.1 818,475 + -1.1 818,502 - -0.3 818,629 - -0.5 818,738 + CSW01_18470 0.27 -2.6 818,829 - CSW01_18470 0.77 +0.8 818,867 + +0.7 818,873 - -1.0 819,025 - -0.6 819,078 + -2.1 819,213 + -0.5 819,220 - -1.8 819,223 - -0.4 819,260 - -1.2 819,267 + -1.9 819,301 - -1.0 819,325 + +0.6 819,325 + -0.2 819,325 + -0.3 819,333 - -3.1 819,333 - -0.7 819,333 - +0.0 819,440 - +0.7 819,557 - CSW01_18475 0.16 -0.0 819,757 + CSW01_18475 0.37 +2.3 819,781 + CSW01_18475 0.40 +1.1 819,789 - CSW01_18475 0.41 +0.5 819,846 - CSW01_18475 0.47 +0.3 819,846 - CSW01_18475 0.47 +0.2 819,859 - CSW01_18475 0.48 +1.8 820,137 + CSW01_18475 0.77 +0.3 820,171 - CSW01_18475 0.81 -2.1 820,171 - CSW01_18475 0.81 +0.1 820,219 - CSW01_18475 0.86 -1.5 820,265 + -0.2 820,273 - +0.3 820,320 - -1.2 820,382 - -1.2 820,513 + -0.9 820,559 - -0.5 820,726 - +1.6 820,926 - CSW01_18480 0.24 -0.5 820,927 + CSW01_18480 0.24 -2.3 820,969 + CSW01_18480 0.27 -0.6 820,977 - CSW01_18480 0.27 -3.4 821,222 + CSW01_18480 0.45 -3.4 821,230 - CSW01_18480 0.45 -0.4 821,280 + CSW01_18480 0.49 -0.3 821,280 + CSW01_18480 0.49 -0.3 821,288 - CSW01_18480 0.49 +1.1 821,288 - CSW01_18480 0.49 -0.3 821,288 - CSW01_18480 0.49 -2.8 821,288 - CSW01_18480 0.49 -0.1
Or see this region's nucleotide sequence