Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18415

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18405 and CSW01_18410 overlap by 13 nucleotidesCSW01_18410 and CSW01_18415 are separated by 8 nucleotidesCSW01_18415 and CSW01_18420 are separated by 161 nucleotidesCSW01_18420 and CSW01_18425 are separated by 7 nucleotides CSW01_18405: CSW01_18405 - ABC transporter permease, at 803,317 to 804,576 _18405 CSW01_18410: CSW01_18410 - ABC transporter ATP-binding protein, at 804,564 to 805,247 _18410 CSW01_18415: CSW01_18415 - hypothetical protein, at 805,256 to 805,927 _18415 CSW01_18420: CSW01_18420 - hypothetical protein, at 806,089 to 806,232 _18420 CSW01_18425: CSW01_18425 - oxidoreductase, at 806,240 to 807,163 _18425 Position (kb) 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 804.257 kb on - strand, within CSW01_18405at 804.327 kb on + strand, within CSW01_18405at 804.352 kb on + strand, within CSW01_18405at 804.452 kb on - strandat 804.501 kb on + strandat 804.640 kb on - strand, within CSW01_18410at 804.645 kb on - strand, within CSW01_18410at 804.740 kb on - strand, within CSW01_18410at 804.884 kb on + strand, within CSW01_18410at 804.899 kb on + strand, within CSW01_18410at 805.001 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.032 kb on - strand, within CSW01_18410at 805.124 kb on + strand, within CSW01_18410at 805.132 kb on + strand, within CSW01_18410at 805.140 kb on - strand, within CSW01_18410at 805.149 kb on + strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.181 kb on - strandat 805.182 kb on + strandat 805.182 kb on + strandat 805.187 kb on + strandat 805.190 kb on - strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.274 kb on + strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.337 kb on - strand, within CSW01_18415at 805.383 kb on - strand, within CSW01_18415at 805.464 kb on - strand, within CSW01_18415at 805.561 kb on + strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.577 kb on + strand, within CSW01_18415at 805.707 kb on - strand, within CSW01_18415at 805.709 kb on + strand, within CSW01_18415at 805.724 kb on + strand, within CSW01_18415at 805.778 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.822 kb on - strand, within CSW01_18415at 805.826 kb on + strand, within CSW01_18415at 805.856 kb on + strand, within CSW01_18415at 805.983 kb on - strandat 806.079 kb on - strandat 806.135 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.204 kb on - strand, within CSW01_18420at 806.209 kb on + strand, within CSW01_18420at 806.237 kb on - strandat 806.249 kb on + strandat 806.249 kb on + strandat 806.249 kb on + strandat 806.257 kb on - strandat 806.306 kb on + strandat 806.424 kb on - strand, within CSW01_18425at 806.428 kb on + strand, within CSW01_18425at 806.446 kb on - strand, within CSW01_18425at 806.451 kb on - strand, within CSW01_18425at 806.509 kb on + strand, within CSW01_18425at 806.602 kb on - strand, within CSW01_18425at 806.608 kb on - strand, within CSW01_18425at 806.618 kb on - strand, within CSW01_18425at 806.626 kb on - strand, within CSW01_18425at 806.653 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.697 kb on + strand, within CSW01_18425at 806.705 kb on - strand, within CSW01_18425at 806.803 kb on + strand, within CSW01_18425at 806.887 kb on + strand, within CSW01_18425at 806.895 kb on - strand, within CSW01_18425

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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804,257 - CSW01_18405 0.75 +0.3
804,327 + CSW01_18405 0.80 -0.1
804,352 + CSW01_18405 0.82 -0.6
804,452 - +0.0
804,501 + +0.2
804,640 - CSW01_18410 0.11 -1.7
804,645 - CSW01_18410 0.12 +1.5
804,740 - CSW01_18410 0.26 -1.7
804,884 + CSW01_18410 0.47 +2.6
804,899 + CSW01_18410 0.49 +1.0
805,001 + CSW01_18410 0.64 +0.9
805,024 + CSW01_18410 0.67 +0.4
805,024 + CSW01_18410 0.67 -0.3
805,024 + CSW01_18410 0.67 -0.1
805,032 - CSW01_18410 0.68 +0.6
805,124 + CSW01_18410 0.82 -2.1
805,132 + CSW01_18410 0.83 -0.7
805,140 - CSW01_18410 0.84 -2.9
805,149 + CSW01_18410 0.86 -1.6
805,157 - CSW01_18410 0.87 -0.2
805,157 - CSW01_18410 0.87 -0.7
805,163 + CSW01_18410 0.88 +1.6
805,163 + CSW01_18410 0.88 +1.0
805,163 + CSW01_18410 0.88 +1.0
805,181 - +0.1
805,182 + +0.0
805,182 + -1.6
805,187 + -0.2
805,190 - -3.2
805,253 + +0.9
805,253 + +0.8
805,253 + +0.2
805,274 + +1.0
805,282 - -0.2
805,282 - -2.1
805,282 - -0.6
805,337 - CSW01_18415 0.12 +1.0
805,383 - CSW01_18415 0.19 +0.5
805,464 - CSW01_18415 0.31 -0.7
805,561 + CSW01_18415 0.45 -2.1
805,569 - CSW01_18415 0.47 -2.5
805,569 - CSW01_18415 0.47 -0.2
805,577 + CSW01_18415 0.48 +1.4
805,707 - CSW01_18415 0.67 -2.2
805,709 + CSW01_18415 0.67 +0.5
805,724 + CSW01_18415 0.70 +0.9
805,778 + CSW01_18415 0.78 +0.2
805,813 + CSW01_18415 0.83 -0.4
805,813 + CSW01_18415 0.83 +1.0
805,822 - CSW01_18415 0.84 +2.2
805,826 + CSW01_18415 0.85 -0.1
805,856 + CSW01_18415 0.89 +0.5
805,983 - +0.6
806,079 - +1.4
806,135 + CSW01_18420 0.32 -3.4
806,196 + CSW01_18420 0.74 +0.3
806,196 + CSW01_18420 0.74 -2.0
806,204 - CSW01_18420 0.80 +0.3
806,209 + CSW01_18420 0.83 -2.8
806,237 - +1.2
806,249 + +0.7
806,249 + -2.9
806,249 + +0.4
806,257 - +0.5
806,306 + +0.3
806,424 - CSW01_18425 0.20 +0.1
806,428 + CSW01_18425 0.20 +0.1
806,446 - CSW01_18425 0.22 -1.0
806,451 - CSW01_18425 0.23 +2.6
806,509 + CSW01_18425 0.29 +1.7
806,602 - CSW01_18425 0.39 -0.1
806,608 - CSW01_18425 0.40 +0.9
806,618 - CSW01_18425 0.41 +2.6
806,626 - CSW01_18425 0.42 -3.1
806,653 + CSW01_18425 0.45 -1.8
806,658 + CSW01_18425 0.45 +1.5
806,658 + CSW01_18425 0.45 +1.9
806,697 + CSW01_18425 0.49 -1.3
806,705 - CSW01_18425 0.50 +1.3
806,803 + CSW01_18425 0.61 -1.2
806,887 + CSW01_18425 0.70 +1.4
806,895 - CSW01_18425 0.71 -1.7

Or see this region's nucleotide sequence