Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18285 and CSW01_18290 overlap by 11 nucleotides CSW01_18290 and CSW01_18295 are separated by 233 nucleotides
CSW01_18285: CSW01_18285 - 4a-hydroxytetrahydrobiopterin dehydratase, at 770,620 to 770,949
_18285
CSW01_18290: CSW01_18290 - phenylalanine 4-monooxygenase, at 770,939 to 771,733
_18290
CSW01_18295: CSW01_18295 - acetoacetate--CoA ligase, at 771,967 to 773,917
_18295
Position (kb) 770
771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 770.191 kb on + strand at 770.312 kb on - strand at 770.598 kb on + strand at 770.789 kb on + strand, within CSW01_18285 at 770.834 kb on - strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 771.016 kb on - strand at 771.026 kb on + strand, within CSW01_18290 at 771.037 kb on + strand, within CSW01_18290 at 771.044 kb on - strand, within CSW01_18290 at 771.050 kb on + strand, within CSW01_18290 at 771.091 kb on - strand, within CSW01_18290 at 771.105 kb on - strand, within CSW01_18290 at 771.140 kb on - strand, within CSW01_18290 at 771.247 kb on + strand, within CSW01_18290 at 771.255 kb on - strand, within CSW01_18290 at 771.347 kb on + strand, within CSW01_18290 at 771.347 kb on + strand, within CSW01_18290 at 771.365 kb on + strand, within CSW01_18290 at 771.373 kb on - strand, within CSW01_18290 at 771.422 kb on - strand, within CSW01_18290 at 771.422 kb on - strand, within CSW01_18290 at 771.645 kb on + strand, within CSW01_18290 at 771.672 kb on - strand at 771.707 kb on + strand at 771.770 kb on + strand at 771.770 kb on + strand at 771.778 kb on - strand at 771.778 kb on - strand at 771.870 kb on + strand at 771.871 kb on + strand at 772.042 kb on + strand at 772.087 kb on + strand at 772.089 kb on + strand at 772.121 kb on + strand at 772.121 kb on + strand at 772.129 kb on - strand at 772.147 kb on + strand at 772.233 kb on - strand, within CSW01_18295 at 772.246 kb on + strand, within CSW01_18295 at 772.254 kb on - strand, within CSW01_18295 at 772.256 kb on - strand, within CSW01_18295 at 772.435 kb on + strand, within CSW01_18295 at 772.489 kb on - strand, within CSW01_18295 at 772.640 kb on - strand, within CSW01_18295
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 770,191 + +1.4 770,312 - -0.3 770,598 + +0.4 770,789 + CSW01_18285 0.51 -2.2 770,834 - CSW01_18285 0.65 +1.0 770,910 + CSW01_18285 0.88 +0.5 770,910 + CSW01_18285 0.88 +0.9 770,910 + CSW01_18285 0.88 +1.7 770,910 + CSW01_18285 0.88 -0.4 771,016 - -1.1 771,026 + CSW01_18290 0.11 -1.0 771,037 + CSW01_18290 0.12 +0.2 771,044 - CSW01_18290 0.13 -0.6 771,050 + CSW01_18290 0.14 -0.5 771,091 - CSW01_18290 0.19 +0.7 771,105 - CSW01_18290 0.21 -0.4 771,140 - CSW01_18290 0.25 -1.1 771,247 + CSW01_18290 0.39 +0.4 771,255 - CSW01_18290 0.40 +2.0 771,347 + CSW01_18290 0.51 -0.1 771,347 + CSW01_18290 0.51 +1.1 771,365 + CSW01_18290 0.54 +1.3 771,373 - CSW01_18290 0.55 +1.0 771,422 - CSW01_18290 0.61 +0.6 771,422 - CSW01_18290 0.61 -1.5 771,645 + CSW01_18290 0.89 +0.5 771,672 - +1.2 771,707 + -1.1 771,770 + +1.1 771,770 + -1.3 771,778 - -0.1 771,778 - +0.9 771,870 + -1.4 771,871 + +0.5 772,042 + -0.7 772,087 + -3.3 772,089 + -2.0 772,121 + +0.7 772,121 + -1.5 772,129 - +0.3 772,147 + -3.3 772,233 - CSW01_18295 0.14 -0.3 772,246 + CSW01_18295 0.14 +0.8 772,254 - CSW01_18295 0.15 -0.4 772,256 - CSW01_18295 0.15 +1.4 772,435 + CSW01_18295 0.24 +0.2 772,489 - CSW01_18295 0.27 +2.7 772,640 - CSW01_18295 0.34 +0.8
Or see this region's nucleotide sequence