Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18165

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18155 and CSW01_18160 are separated by 138 nucleotidesCSW01_18160 and CSW01_18165 are separated by 321 nucleotidesCSW01_18165 and CSW01_18170 are separated by 118 nucleotides CSW01_18155: CSW01_18155 - HAD family hydrolase, at 737,846 to 738,526 _18155 CSW01_18160: CSW01_18160 - hypothetical protein, at 738,665 to 739,171 _18160 CSW01_18165: CSW01_18165 - hypothetical protein, at 739,493 to 739,975 _18165 CSW01_18170: CSW01_18170 - inosine/guanosine kinase, at 740,094 to 741,398 _18170 Position (kb) 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 738.515 kb on + strandat 738.551 kb on - strandat 738.551 kb on - strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.739 kb on - strand, within CSW01_18160at 738.787 kb on + strand, within CSW01_18160at 738.922 kb on + strand, within CSW01_18160at 738.930 kb on - strand, within CSW01_18160at 738.939 kb on + strand, within CSW01_18160at 739.060 kb on - strand, within CSW01_18160at 739.078 kb on + strand, within CSW01_18160at 739.078 kb on + strand, within CSW01_18160at 739.086 kb on - strand, within CSW01_18160at 739.086 kb on - strand, within CSW01_18160at 739.086 kb on - strand, within CSW01_18160at 739.152 kb on + strandat 739.195 kb on + strandat 739.239 kb on + strandat 739.261 kb on + strandat 739.396 kb on - strandat 739.402 kb on + strandat 739.402 kb on + strandat 739.402 kb on + strandat 739.410 kb on - strandat 739.412 kb on + strandat 739.420 kb on - strandat 739.514 kb on + strandat 739.514 kb on + strandat 739.522 kb on - strandat 739.547 kb on + strand, within CSW01_18165at 739.681 kb on - strand, within CSW01_18165at 739.762 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.904 kb on - strand, within CSW01_18165at 739.904 kb on - strand, within CSW01_18165at 739.934 kb on + strandat 739.942 kb on - strandat 739.991 kb on + strandat 739.997 kb on - strandat 739.998 kb on - strandat 740.019 kb on - strandat 740.111 kb on + strandat 740.111 kb on + strandat 740.111 kb on + strandat 740.184 kb on - strandat 740.185 kb on - strandat 740.254 kb on + strand, within CSW01_18170at 740.269 kb on - strand, within CSW01_18170at 740.282 kb on - strand, within CSW01_18170at 740.303 kb on + strand, within CSW01_18170at 740.311 kb on - strand, within CSW01_18170at 740.353 kb on + strand, within CSW01_18170at 740.434 kb on + strand, within CSW01_18170at 740.480 kb on + strand, within CSW01_18170at 740.554 kb on - strand, within CSW01_18170at 740.702 kb on + strand, within CSW01_18170at 740.762 kb on + strand, within CSW01_18170at 740.763 kb on + strand, within CSW01_18170at 740.763 kb on + strand, within CSW01_18170at 740.923 kb on + strand, within CSW01_18170at 740.926 kb on - strand, within CSW01_18170at 740.937 kb on - strand, within CSW01_18170at 740.939 kb on + strand, within CSW01_18170at 740.939 kb on + strand, within CSW01_18170at 740.963 kb on + strand, within CSW01_18170at 740.971 kb on - strand, within CSW01_18170

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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738,515 + -1.4
738,551 - -0.4
738,551 - -0.1
738,553 + -0.9
738,553 + +1.7
738,553 + +1.7
738,553 + +0.9
738,739 - CSW01_18160 0.15 +1.3
738,787 + CSW01_18160 0.24 -0.7
738,922 + CSW01_18160 0.51 -0.1
738,930 - CSW01_18160 0.52 -0.1
738,939 + CSW01_18160 0.54 -0.2
739,060 - CSW01_18160 0.78 +1.3
739,078 + CSW01_18160 0.81 -2.6
739,078 + CSW01_18160 0.81 -0.2
739,086 - CSW01_18160 0.83 +1.4
739,086 - CSW01_18160 0.83 -0.7
739,086 - CSW01_18160 0.83 -1.2
739,152 + -0.6
739,195 + +1.6
739,239 + -3.0
739,261 + -0.8
739,396 - -2.9
739,402 + +0.9
739,402 + -2.4
739,402 + +0.2
739,410 - +0.3
739,412 + -2.4
739,420 - +0.9
739,514 + -0.2
739,514 + -1.4
739,522 - -2.1
739,547 + CSW01_18165 0.11 +0.9
739,681 - CSW01_18165 0.39 -0.7
739,762 + CSW01_18165 0.56 +1.3
739,896 + CSW01_18165 0.83 -0.1
739,896 + CSW01_18165 0.83 +0.3
739,896 + CSW01_18165 0.83 -2.8
739,896 + CSW01_18165 0.83 -3.4
739,896 + CSW01_18165 0.83 +1.8
739,896 + CSW01_18165 0.83 +0.2
739,904 - CSW01_18165 0.85 +0.0
739,904 - CSW01_18165 0.85 -2.6
739,934 + +0.3
739,942 - +0.4
739,991 + -1.2
739,997 - -0.9
739,998 - -1.1
740,019 - -2.2
740,111 + -1.0
740,111 + -2.6
740,111 + -0.4
740,184 - -2.3
740,185 - -1.1
740,254 + CSW01_18170 0.12 -0.9
740,269 - CSW01_18170 0.13 -3.3
740,282 - CSW01_18170 0.14 -0.1
740,303 + CSW01_18170 0.16 +2.4
740,311 - CSW01_18170 0.17 +0.2
740,353 + CSW01_18170 0.20 +0.4
740,434 + CSW01_18170 0.26 +0.8
740,480 + CSW01_18170 0.30 +0.3
740,554 - CSW01_18170 0.35 -0.6
740,702 + CSW01_18170 0.47 -0.9
740,762 + CSW01_18170 0.51 +0.4
740,763 + CSW01_18170 0.51 -0.3
740,763 + CSW01_18170 0.51 -0.8
740,923 + CSW01_18170 0.64 +0.9
740,926 - CSW01_18170 0.64 -0.1
740,937 - CSW01_18170 0.65 -0.3
740,939 + CSW01_18170 0.65 -0.9
740,939 + CSW01_18170 0.65 +0.9
740,963 + CSW01_18170 0.67 +0.4
740,971 - CSW01_18170 0.67 -1.1

Or see this region's nucleotide sequence