Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18155

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18145 and CSW01_18150 are separated by 237 nucleotidesCSW01_18150 and CSW01_18155 are separated by 195 nucleotidesCSW01_18155 and CSW01_18160 are separated by 138 nucleotidesCSW01_18160 and CSW01_18165 are separated by 321 nucleotides CSW01_18145: CSW01_18145 - resolvase, at 736,235 to 737,191 _18145 CSW01_18150: CSW01_18150 - transcription initiation factor TFIIIB, at 737,429 to 737,650 _18150 CSW01_18155: CSW01_18155 - HAD family hydrolase, at 737,846 to 738,526 _18155 CSW01_18160: CSW01_18160 - hypothetical protein, at 738,665 to 739,171 _18160 CSW01_18165: CSW01_18165 - hypothetical protein, at 739,493 to 739,975 _18165 Position (kb) 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 736.849 kb on - strand, within CSW01_18145at 736.849 kb on - strand, within CSW01_18145at 736.873 kb on + strand, within CSW01_18145at 736.873 kb on + strand, within CSW01_18145at 736.898 kb on + strand, within CSW01_18145at 736.898 kb on + strand, within CSW01_18145at 736.906 kb on - strand, within CSW01_18145at 736.928 kb on + strand, within CSW01_18145at 736.979 kb on - strand, within CSW01_18145at 737.021 kb on + strand, within CSW01_18145at 737.021 kb on + strand, within CSW01_18145at 737.034 kb on - strand, within CSW01_18145at 737.079 kb on + strand, within CSW01_18145at 737.094 kb on + strand, within CSW01_18145at 737.333 kb on + strandat 737.371 kb on + strandat 737.383 kb on + strandat 737.396 kb on - strandat 737.401 kb on - strandat 737.401 kb on - strandat 737.484 kb on - strand, within CSW01_18150at 737.773 kb on + strandat 737.882 kb on - strandat 737.896 kb on + strandat 737.959 kb on + strand, within CSW01_18155at 737.959 kb on + strand, within CSW01_18155at 737.989 kb on - strand, within CSW01_18155at 738.136 kb on + strand, within CSW01_18155at 738.141 kb on + strand, within CSW01_18155at 738.224 kb on - strand, within CSW01_18155at 738.312 kb on - strand, within CSW01_18155at 738.407 kb on + strand, within CSW01_18155at 738.455 kb on + strand, within CSW01_18155at 738.472 kb on + strandat 738.480 kb on - strandat 738.491 kb on + strandat 738.515 kb on + strandat 738.551 kb on - strandat 738.551 kb on - strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.739 kb on - strand, within CSW01_18160at 738.787 kb on + strand, within CSW01_18160at 738.922 kb on + strand, within CSW01_18160at 738.930 kb on - strand, within CSW01_18160at 738.939 kb on + strand, within CSW01_18160at 739.060 kb on - strand, within CSW01_18160at 739.078 kb on + strand, within CSW01_18160at 739.078 kb on + strand, within CSW01_18160at 739.086 kb on - strand, within CSW01_18160at 739.086 kb on - strand, within CSW01_18160at 739.086 kb on - strand, within CSW01_18160at 739.152 kb on + strandat 739.195 kb on + strandat 739.239 kb on + strandat 739.261 kb on + strandat 739.396 kb on - strandat 739.402 kb on + strandat 739.402 kb on + strandat 739.402 kb on + strandat 739.410 kb on - strandat 739.412 kb on + strandat 739.420 kb on - strandat 739.514 kb on + strandat 739.514 kb on + strandat 739.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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736,849 - CSW01_18145 0.64 +1.1
736,849 - CSW01_18145 0.64 +0.2
736,873 + CSW01_18145 0.67 -0.5
736,873 + CSW01_18145 0.67 +0.5
736,898 + CSW01_18145 0.69 -1.4
736,898 + CSW01_18145 0.69 -0.1
736,906 - CSW01_18145 0.70 +0.6
736,928 + CSW01_18145 0.72 +1.3
736,979 - CSW01_18145 0.78 +0.5
737,021 + CSW01_18145 0.82 -3.1
737,021 + CSW01_18145 0.82 -2.9
737,034 - CSW01_18145 0.83 -1.4
737,079 + CSW01_18145 0.88 +0.0
737,094 + CSW01_18145 0.90 +0.6
737,333 + +0.2
737,371 + +0.2
737,383 + -3.1
737,396 - +0.2
737,401 - -0.0
737,401 - -1.5
737,484 - CSW01_18150 0.25 -2.8
737,773 + -2.1
737,882 - +0.9
737,896 + +1.9
737,959 + CSW01_18155 0.17 -0.7
737,959 + CSW01_18155 0.17 +0.1
737,989 - CSW01_18155 0.21 -1.4
738,136 + CSW01_18155 0.43 +0.8
738,141 + CSW01_18155 0.43 -2.4
738,224 - CSW01_18155 0.56 -2.1
738,312 - CSW01_18155 0.68 -3.8
738,407 + CSW01_18155 0.82 -2.4
738,455 + CSW01_18155 0.89 +0.3
738,472 + -2.4
738,480 - +0.0
738,491 + +1.0
738,515 + -1.4
738,551 - -0.4
738,551 - -0.1
738,553 + -0.9
738,553 + +1.7
738,553 + +1.7
738,553 + +0.9
738,739 - CSW01_18160 0.15 +1.3
738,787 + CSW01_18160 0.24 -0.7
738,922 + CSW01_18160 0.51 -0.1
738,930 - CSW01_18160 0.52 -0.1
738,939 + CSW01_18160 0.54 -0.2
739,060 - CSW01_18160 0.78 +1.3
739,078 + CSW01_18160 0.81 -2.6
739,078 + CSW01_18160 0.81 -0.2
739,086 - CSW01_18160 0.83 +1.4
739,086 - CSW01_18160 0.83 -0.7
739,086 - CSW01_18160 0.83 -1.2
739,152 + -0.6
739,195 + +1.6
739,239 + -3.0
739,261 + -0.8
739,396 - -2.9
739,402 + +0.9
739,402 + -2.4
739,402 + +0.2
739,410 - +0.3
739,412 + -2.4
739,420 - +0.9
739,514 + -0.2
739,514 + -1.4
739,522 - -2.1

Or see this region's nucleotide sequence