Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18095

Experiment: ICP1_phage_23.5_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18085 and CSW01_18090 overlap by 50 nucleotidesCSW01_18090 and CSW01_18095 are separated by 89 nucleotidesCSW01_18095 and CSW01_18100 are separated by 168 nucleotides CSW01_18085: CSW01_18085 - ABC transporter, at 724,398 to 725,075 _18085 CSW01_18090: CSW01_18090 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 725,026 to 725,673 _18090 CSW01_18095: CSW01_18095 - enoyl-[acyl-carrier-protein] reductase FabV, at 725,763 to 726,971 _18095 CSW01_18100: CSW01_18100 - sensor domain-containing phosphodiesterase, at 727,140 to 729,023 _18100 Position (kb) 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 724.829 kb on - strand, within CSW01_18085at 724.836 kb on + strand, within CSW01_18085at 724.880 kb on - strand, within CSW01_18085at 724.907 kb on - strand, within CSW01_18085at 724.915 kb on + strand, within CSW01_18085at 724.923 kb on - strand, within CSW01_18085at 724.948 kb on - strand, within CSW01_18085at 725.005 kb on - strand, within CSW01_18085at 725.016 kb on + strandat 725.029 kb on - strandat 725.043 kb on - strandat 725.109 kb on + strand, within CSW01_18090at 725.156 kb on + strand, within CSW01_18090at 725.167 kb on + strand, within CSW01_18090at 725.175 kb on - strand, within CSW01_18090at 725.238 kb on - strand, within CSW01_18090at 725.320 kb on - strand, within CSW01_18090at 725.322 kb on + strand, within CSW01_18090at 725.330 kb on - strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.398 kb on - strand, within CSW01_18090at 725.398 kb on - strand, within CSW01_18090at 725.449 kb on + strand, within CSW01_18090at 725.482 kb on + strand, within CSW01_18090at 725.482 kb on + strand, within CSW01_18090at 725.490 kb on - strand, within CSW01_18090at 725.503 kb on - strand, within CSW01_18090at 725.505 kb on + strand, within CSW01_18090at 725.553 kb on - strand, within CSW01_18090at 725.579 kb on - strand, within CSW01_18090at 725.579 kb on - strand, within CSW01_18090at 725.594 kb on - strand, within CSW01_18090at 725.608 kb on - strand, within CSW01_18090at 725.614 kb on + strandat 725.625 kb on + strandat 725.633 kb on - strandat 725.647 kb on + strandat 725.758 kb on + strandat 725.935 kb on + strand, within CSW01_18095at 725.935 kb on + strand, within CSW01_18095at 725.943 kb on - strand, within CSW01_18095at 725.943 kb on - strand, within CSW01_18095at 725.954 kb on - strand, within CSW01_18095at 725.983 kb on + strand, within CSW01_18095at 725.997 kb on - strand, within CSW01_18095at 726.019 kb on - strand, within CSW01_18095at 726.025 kb on - strand, within CSW01_18095at 726.027 kb on - strand, within CSW01_18095at 726.262 kb on + strand, within CSW01_18095at 726.276 kb on + strand, within CSW01_18095at 726.460 kb on + strand, within CSW01_18095at 726.468 kb on - strand, within CSW01_18095at 726.503 kb on - strand, within CSW01_18095at 726.503 kb on - strand, within CSW01_18095at 726.653 kb on + strand, within CSW01_18095at 726.653 kb on + strand, within CSW01_18095at 726.653 kb on + strand, within CSW01_18095at 726.661 kb on - strand, within CSW01_18095at 726.661 kb on - strand, within CSW01_18095at 726.696 kb on + strand, within CSW01_18095at 726.762 kb on + strand, within CSW01_18095at 726.780 kb on - strand, within CSW01_18095at 726.807 kb on + strand, within CSW01_18095at 727.007 kb on + strandat 727.015 kb on - strandat 727.039 kb on + strandat 727.060 kb on - strandat 727.107 kb on + strandat 727.237 kb on + strandat 727.243 kb on + strandat 727.306 kb on + strandat 727.344 kb on + strand, within CSW01_18100at 727.352 kb on - strand, within CSW01_18100at 727.352 kb on - strand, within CSW01_18100at 727.415 kb on + strand, within CSW01_18100at 727.426 kb on + strand, within CSW01_18100at 727.429 kb on - strand, within CSW01_18100at 727.429 kb on - strand, within CSW01_18100at 727.442 kb on + strand, within CSW01_18100at 727.597 kb on + strand, within CSW01_18100at 727.690 kb on - strand, within CSW01_18100at 727.720 kb on + strand, within CSW01_18100at 727.720 kb on + strand, within CSW01_18100at 727.758 kb on - strand, within CSW01_18100at 727.758 kb on - strand, within CSW01_18100at 727.793 kb on - strand, within CSW01_18100at 727.794 kb on - strand, within CSW01_18100at 727.902 kb on - strand, within CSW01_18100at 727.909 kb on - strand, within CSW01_18100at 727.909 kb on - strand, within CSW01_18100at 727.937 kb on + strand, within CSW01_18100at 727.967 kb on - strand, within CSW01_18100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
remove
724,829 - CSW01_18085 0.64 -0.2
724,836 + CSW01_18085 0.65 +1.5
724,880 - CSW01_18085 0.71 -2.4
724,907 - CSW01_18085 0.75 +1.3
724,915 + CSW01_18085 0.76 -1.6
724,923 - CSW01_18085 0.77 -0.7
724,948 - CSW01_18085 0.81 +0.9
725,005 - CSW01_18085 0.90 -1.3
725,016 + -1.9
725,029 - +0.9
725,043 - +0.7
725,109 + CSW01_18090 0.13 +0.4
725,156 + CSW01_18090 0.20 -2.6
725,167 + CSW01_18090 0.22 -1.2
725,175 - CSW01_18090 0.23 +0.4
725,238 - CSW01_18090 0.33 +1.2
725,320 - CSW01_18090 0.45 -1.7
725,322 + CSW01_18090 0.46 +1.2
725,330 - CSW01_18090 0.47 -2.8
725,390 + CSW01_18090 0.56 -0.3
725,390 + CSW01_18090 0.56 -3.2
725,390 + CSW01_18090 0.56 -2.9
725,390 + CSW01_18090 0.56 +0.0
725,390 + CSW01_18090 0.56 -0.4
725,398 - CSW01_18090 0.57 +0.5
725,398 - CSW01_18090 0.57 +1.0
725,449 + CSW01_18090 0.65 -2.4
725,482 + CSW01_18090 0.70 -1.6
725,482 + CSW01_18090 0.70 -0.5
725,490 - CSW01_18090 0.72 -1.7
725,503 - CSW01_18090 0.74 +2.4
725,505 + CSW01_18090 0.74 -2.1
725,553 - CSW01_18090 0.81 -0.2
725,579 - CSW01_18090 0.85 -0.1
725,579 - CSW01_18090 0.85 +1.0
725,594 - CSW01_18090 0.88 +0.7
725,608 - CSW01_18090 0.90 -0.7
725,614 + -0.0
725,625 + +0.3
725,633 - -0.2
725,647 + -1.7
725,758 + -0.3
725,935 + CSW01_18095 0.14 +0.4
725,935 + CSW01_18095 0.14 +0.5
725,943 - CSW01_18095 0.15 +0.4
725,943 - CSW01_18095 0.15 +1.0
725,954 - CSW01_18095 0.16 +0.9
725,983 + CSW01_18095 0.18 +1.3
725,997 - CSW01_18095 0.19 +0.8
726,019 - CSW01_18095 0.21 +0.0
726,025 - CSW01_18095 0.22 +0.1
726,027 - CSW01_18095 0.22 -0.6
726,262 + CSW01_18095 0.41 -3.2
726,276 + CSW01_18095 0.42 +0.0
726,460 + CSW01_18095 0.58 +0.7
726,468 - CSW01_18095 0.58 +1.3
726,503 - CSW01_18095 0.61 +1.2
726,503 - CSW01_18095 0.61 +1.2
726,653 + CSW01_18095 0.74 +1.3
726,653 + CSW01_18095 0.74 +2.0
726,653 + CSW01_18095 0.74 +0.5
726,661 - CSW01_18095 0.74 +1.0
726,661 - CSW01_18095 0.74 +0.8
726,696 + CSW01_18095 0.77 -2.7
726,762 + CSW01_18095 0.83 +0.2
726,780 - CSW01_18095 0.84 -0.3
726,807 + CSW01_18095 0.86 +0.8
727,007 + +0.1
727,015 - -1.3
727,039 + +0.7
727,060 - -0.4
727,107 + +0.0
727,237 + +1.7
727,243 + -0.6
727,306 + +0.5
727,344 + CSW01_18100 0.11 -0.2
727,352 - CSW01_18100 0.11 +1.7
727,352 - CSW01_18100 0.11 -1.4
727,415 + CSW01_18100 0.15 +0.9
727,426 + CSW01_18100 0.15 +0.7
727,429 - CSW01_18100 0.15 +0.9
727,429 - CSW01_18100 0.15 -2.9
727,442 + CSW01_18100 0.16 +0.4
727,597 + CSW01_18100 0.24 +0.6
727,690 - CSW01_18100 0.29 +0.1
727,720 + CSW01_18100 0.31 -3.4
727,720 + CSW01_18100 0.31 -0.2
727,758 - CSW01_18100 0.33 -0.6
727,758 - CSW01_18100 0.33 -1.6
727,793 - CSW01_18100 0.35 -0.1
727,794 - CSW01_18100 0.35 +0.9
727,902 - CSW01_18100 0.40 -0.0
727,909 - CSW01_18100 0.41 -1.1
727,909 - CSW01_18100 0.41 +1.3
727,937 + CSW01_18100 0.42 +0.1
727,967 - CSW01_18100 0.44 +1.4

Or see this region's nucleotide sequence