Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17670 and CSW01_17675 are separated by 357 nucleotides CSW01_17675 and CSW01_17680 are separated by 302 nucleotides
CSW01_17670: CSW01_17670 - hypothetical protein, at 632,262 to 632,933
_17670
CSW01_17675: CSW01_17675 - GGDEF domain-containing protein, at 633,291 to 635,219
_17675
CSW01_17680: CSW01_17680 - glucose-1-phosphate adenylyltransferase, at 635,522 to 636,745
_17680
Position (kb) 633
634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 632.309 kb on - strand at 632.309 kb on - strand at 632.324 kb on - strand at 632.324 kb on - strand at 632.324 kb on - strand at 632.333 kb on + strand, within CSW01_17670 at 632.354 kb on + strand, within CSW01_17670 at 632.354 kb on + strand, within CSW01_17670 at 632.568 kb on - strand, within CSW01_17670 at 632.568 kb on - strand, within CSW01_17670 at 632.717 kb on + strand, within CSW01_17670 at 632.796 kb on - strand, within CSW01_17670 at 632.823 kb on + strand, within CSW01_17670 at 632.844 kb on + strand, within CSW01_17670 at 633.298 kb on + strand at 633.298 kb on + strand at 633.342 kb on + strand at 633.344 kb on - strand at 633.351 kb on - strand at 633.408 kb on - strand at 633.434 kb on + strand at 633.460 kb on - strand at 633.488 kb on + strand, within CSW01_17675 at 633.528 kb on + strand, within CSW01_17675 at 633.573 kb on + strand, within CSW01_17675 at 633.574 kb on - strand, within CSW01_17675 at 633.581 kb on - strand, within CSW01_17675 at 633.605 kb on - strand, within CSW01_17675 at 633.608 kb on + strand, within CSW01_17675 at 633.616 kb on - strand, within CSW01_17675 at 633.624 kb on + strand, within CSW01_17675 at 633.745 kb on + strand, within CSW01_17675 at 633.753 kb on - strand, within CSW01_17675 at 633.796 kb on - strand, within CSW01_17675 at 633.852 kb on - strand, within CSW01_17675 at 633.899 kb on - strand, within CSW01_17675 at 634.000 kb on + strand, within CSW01_17675 at 634.046 kb on - strand, within CSW01_17675 at 634.065 kb on + strand, within CSW01_17675 at 634.080 kb on - strand, within CSW01_17675 at 634.111 kb on + strand, within CSW01_17675 at 634.119 kb on - strand, within CSW01_17675 at 634.162 kb on + strand, within CSW01_17675 at 634.186 kb on - strand, within CSW01_17675 at 634.232 kb on - strand, within CSW01_17675 at 634.232 kb on - strand, within CSW01_17675 at 634.232 kb on - strand, within CSW01_17675 at 634.251 kb on + strand, within CSW01_17675 at 634.277 kb on - strand, within CSW01_17675 at 634.277 kb on - strand, within CSW01_17675 at 634.376 kb on - strand, within CSW01_17675 at 634.452 kb on - strand, within CSW01_17675 at 634.467 kb on - strand, within CSW01_17675 at 634.469 kb on + strand, within CSW01_17675 at 634.535 kb on + strand, within CSW01_17675 at 634.545 kb on + strand, within CSW01_17675 at 634.553 kb on - strand, within CSW01_17675 at 634.839 kb on + strand, within CSW01_17675 at 634.894 kb on - strand, within CSW01_17675 at 635.025 kb on + strand, within CSW01_17675 at 635.136 kb on + strand at 635.267 kb on - strand at 635.287 kb on + strand at 635.287 kb on + strand at 635.295 kb on - strand at 635.311 kb on - strand at 635.312 kb on - strand at 635.328 kb on + strand at 635.336 kb on - strand at 635.341 kb on - strand at 635.341 kb on - strand at 635.498 kb on - strand at 635.517 kb on + strand at 635.525 kb on - strand at 635.756 kb on - strand, within CSW01_17680 at 635.849 kb on - strand, within CSW01_17680 at 635.961 kb on + strand, within CSW01_17680 at 636.055 kb on - strand, within CSW01_17680
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 632,309 - +2.2 632,309 - -2.3 632,324 - +0.4 632,324 - +1.0 632,324 - +0.0 632,333 + CSW01_17670 0.11 -0.6 632,354 + CSW01_17670 0.14 -0.3 632,354 + CSW01_17670 0.14 +0.3 632,568 - CSW01_17670 0.46 +0.2 632,568 - CSW01_17670 0.46 -0.7 632,717 + CSW01_17670 0.68 -1.4 632,796 - CSW01_17670 0.79 +0.7 632,823 + CSW01_17670 0.83 +1.1 632,844 + CSW01_17670 0.87 +0.0 633,298 + +0.9 633,298 + -2.4 633,342 + -0.7 633,344 - -0.3 633,351 - -0.1 633,408 - +0.9 633,434 + -0.0 633,460 - +1.2 633,488 + CSW01_17675 0.10 +1.3 633,528 + CSW01_17675 0.12 +1.1 633,573 + CSW01_17675 0.15 -1.4 633,574 - CSW01_17675 0.15 -0.1 633,581 - CSW01_17675 0.15 +0.4 633,605 - CSW01_17675 0.16 +0.3 633,608 + CSW01_17675 0.16 -3.0 633,616 - CSW01_17675 0.17 +0.3 633,624 + CSW01_17675 0.17 +0.3 633,745 + CSW01_17675 0.24 +0.7 633,753 - CSW01_17675 0.24 -0.2 633,796 - CSW01_17675 0.26 +0.7 633,852 - CSW01_17675 0.29 -0.5 633,899 - CSW01_17675 0.32 +0.0 634,000 + CSW01_17675 0.37 -0.4 634,046 - CSW01_17675 0.39 -0.5 634,065 + CSW01_17675 0.40 -3.5 634,080 - CSW01_17675 0.41 -0.7 634,111 + CSW01_17675 0.43 +0.6 634,119 - CSW01_17675 0.43 -2.1 634,162 + CSW01_17675 0.45 +0.1 634,186 - CSW01_17675 0.46 +0.2 634,232 - CSW01_17675 0.49 -1.2 634,232 - CSW01_17675 0.49 -2.7 634,232 - CSW01_17675 0.49 -1.5 634,251 + CSW01_17675 0.50 -0.1 634,277 - CSW01_17675 0.51 -0.9 634,277 - CSW01_17675 0.51 +0.1 634,376 - CSW01_17675 0.56 +0.3 634,452 - CSW01_17675 0.60 +0.9 634,467 - CSW01_17675 0.61 +1.0 634,469 + CSW01_17675 0.61 -0.1 634,535 + CSW01_17675 0.64 -0.4 634,545 + CSW01_17675 0.65 +0.9 634,553 - CSW01_17675 0.65 -0.4 634,839 + CSW01_17675 0.80 -1.6 634,894 - CSW01_17675 0.83 -1.3 635,025 + CSW01_17675 0.90 -1.3 635,136 + -1.6 635,267 - -1.0 635,287 + -1.3 635,287 + -0.9 635,295 - +0.0 635,311 - +1.6 635,312 - +0.7 635,328 + -0.7 635,336 - -0.7 635,341 - -2.3 635,341 - -1.4 635,498 - -0.2 635,517 + +1.0 635,525 - -1.7 635,756 - CSW01_17680 0.19 +1.9 635,849 - CSW01_17680 0.27 +1.3 635,961 + CSW01_17680 0.36 -0.3 636,055 - CSW01_17680 0.44 +0.5
Or see this region's nucleotide sequence