Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17115 and CSW01_17120 are separated by 80 nucleotides CSW01_17120 and CSW01_17125 are separated by 0 nucleotides CSW01_17125 and CSW01_17130 are separated by 134 nucleotides CSW01_17130 and CSW01_17135 overlap by 87 nucleotides
CSW01_17115: CSW01_17115 - SgrR family transcriptional regulator, at 515,545 to 517,242
_17115
CSW01_17120: CSW01_17120 - DUF3389 domain-containing protein, at 517,323 to 517,556
_17120
CSW01_17125: CSW01_17125 - esterase, at 517,557 to 518,042
_17125
CSW01_17130: CSW01_17130 - Zn-dependent protease, at 518,177 to 518,968
_17130
CSW01_17135: CSW01_17135 - hypothetical protein, at 518,882 to 519,071
_17135
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 516.813 kb on - strand, within CSW01_17115 at 516.846 kb on - strand, within CSW01_17115 at 516.964 kb on + strand, within CSW01_17115 at 516.972 kb on - strand, within CSW01_17115 at 517.226 kb on - strand at 517.246 kb on + strand at 517.331 kb on + strand at 517.368 kb on + strand, within CSW01_17120 at 517.370 kb on - strand, within CSW01_17120 at 517.705 kb on - strand, within CSW01_17125 at 517.720 kb on + strand, within CSW01_17125 at 517.728 kb on - strand, within CSW01_17125 at 517.732 kb on + strand, within CSW01_17125 at 517.745 kb on - strand, within CSW01_17125 at 517.766 kb on - strand, within CSW01_17125 at 517.785 kb on - strand, within CSW01_17125 at 517.785 kb on - strand, within CSW01_17125 at 518.025 kb on - strand at 518.026 kb on + strand at 518.058 kb on - strand at 518.071 kb on + strand at 518.213 kb on + strand at 518.213 kb on + strand at 518.363 kb on + strand, within CSW01_17130 at 518.380 kb on - strand, within CSW01_17130 at 518.423 kb on - strand, within CSW01_17130 at 518.506 kb on + strand, within CSW01_17130 at 518.506 kb on + strand, within CSW01_17130 at 518.622 kb on + strand, within CSW01_17130 at 518.705 kb on + strand, within CSW01_17130 at 518.705 kb on - strand, within CSW01_17130 at 518.808 kb on + strand, within CSW01_17130 at 518.816 kb on - strand, within CSW01_17130 at 518.816 kb on - strand, within CSW01_17130 at 518.856 kb on + strand, within CSW01_17130 at 518.866 kb on + strand, within CSW01_17130 at 518.866 kb on + strand, within CSW01_17130 at 518.874 kb on - strand, within CSW01_17130 at 518.889 kb on + strand at 518.897 kb on - strand at 518.897 kb on - strand at 518.925 kb on - strand at 518.999 kb on - strand, within CSW01_17135 at 518.999 kb on - strand, within CSW01_17135 at 519.014 kb on - strand, within CSW01_17135
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 516,813 - CSW01_17115 0.75 -0.9 516,846 - CSW01_17115 0.77 -0.0 516,964 + CSW01_17115 0.84 -0.0 516,972 - CSW01_17115 0.84 +0.6 517,226 - -0.9 517,246 + -2.9 517,331 + -1.2 517,368 + CSW01_17120 0.19 -0.5 517,370 - CSW01_17120 0.20 +1.6 517,705 - CSW01_17125 0.30 +2.5 517,720 + CSW01_17125 0.34 -1.9 517,728 - CSW01_17125 0.35 -1.7 517,732 + CSW01_17125 0.36 -1.6 517,745 - CSW01_17125 0.39 +0.3 517,766 - CSW01_17125 0.43 -2.4 517,785 - CSW01_17125 0.47 -2.0 517,785 - CSW01_17125 0.47 +1.3 518,025 - -2.0 518,026 + -0.6 518,058 - -0.9 518,071 + -1.0 518,213 + +0.3 518,213 + -1.3 518,363 + CSW01_17130 0.23 +0.2 518,380 - CSW01_17130 0.26 +0.8 518,423 - CSW01_17130 0.31 -1.0 518,506 + CSW01_17130 0.42 -1.0 518,506 + CSW01_17130 0.42 +1.1 518,622 + CSW01_17130 0.56 +1.8 518,705 + CSW01_17130 0.67 +1.6 518,705 - CSW01_17130 0.67 +0.7 518,808 + CSW01_17130 0.80 +1.1 518,816 - CSW01_17130 0.81 -0.1 518,816 - CSW01_17130 0.81 +0.2 518,856 + CSW01_17130 0.86 -0.4 518,866 + CSW01_17130 0.87 -0.8 518,866 + CSW01_17130 0.87 -0.2 518,874 - CSW01_17130 0.88 -1.3 518,889 + +0.1 518,897 - +0.4 518,897 - +0.9 518,925 - -0.2 518,999 - CSW01_17135 0.62 -1.4 518,999 - CSW01_17135 0.62 -0.2 519,014 - CSW01_17135 0.69 -0.0
Or see this region's nucleotide sequence