Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17105

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17100 and CSW01_17105 are separated by 217 nucleotidesCSW01_17105 and CSW01_17110 are separated by 40 nucleotidesCSW01_17110 and CSW01_17115 are separated by 100 nucleotides CSW01_17100: CSW01_17100 - LysR family transcriptional regulator, at 512,020 to 512,907 _17100 CSW01_17105: CSW01_17105 - TonB-dependent hemoglobin/transferrin/lactoferrin family receptor, at 513,125 to 515,221 _17105 CSW01_17110: CSW01_17110 - hypothetical protein, at 515,262 to 515,444 _17110 CSW01_17115: CSW01_17115 - SgrR family transcriptional regulator, at 515,545 to 517,242 _17115 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 512.159 kb on + strand, within CSW01_17100at 512.165 kb on + strand, within CSW01_17100at 512.167 kb on - strand, within CSW01_17100at 512.173 kb on - strand, within CSW01_17100at 512.189 kb on + strand, within CSW01_17100at 512.333 kb on + strand, within CSW01_17100at 512.363 kb on - strand, within CSW01_17100at 512.388 kb on + strand, within CSW01_17100at 512.396 kb on - strand, within CSW01_17100at 512.412 kb on + strand, within CSW01_17100at 512.557 kb on - strand, within CSW01_17100at 512.597 kb on + strand, within CSW01_17100at 512.605 kb on - strand, within CSW01_17100at 512.654 kb on + strand, within CSW01_17100at 512.687 kb on + strand, within CSW01_17100at 512.695 kb on - strand, within CSW01_17100at 512.695 kb on - strand, within CSW01_17100at 512.765 kb on + strand, within CSW01_17100at 512.816 kb on + strand, within CSW01_17100at 512.819 kb on - strandat 512.824 kb on - strandat 512.856 kb on + strandat 512.891 kb on - strandat 512.891 kb on - strandat 513.134 kb on + strandat 513.295 kb on - strandat 513.311 kb on - strandat 513.570 kb on + strand, within CSW01_17105at 513.570 kb on + strand, within CSW01_17105at 513.571 kb on - strand, within CSW01_17105at 513.578 kb on - strand, within CSW01_17105at 513.578 kb on - strand, within CSW01_17105at 513.637 kb on + strand, within CSW01_17105at 513.694 kb on + strand, within CSW01_17105at 513.701 kb on + strand, within CSW01_17105at 513.741 kb on + strand, within CSW01_17105at 513.846 kb on - strand, within CSW01_17105at 513.917 kb on + strand, within CSW01_17105at 513.930 kb on - strand, within CSW01_17105at 513.966 kb on + strand, within CSW01_17105at 513.967 kb on - strand, within CSW01_17105at 513.973 kb on + strand, within CSW01_17105at 513.974 kb on - strand, within CSW01_17105at 514.319 kb on + strand, within CSW01_17105at 514.337 kb on - strand, within CSW01_17105at 514.351 kb on - strand, within CSW01_17105at 514.389 kb on + strand, within CSW01_17105at 514.389 kb on + strand, within CSW01_17105at 514.397 kb on - strand, within CSW01_17105at 514.397 kb on - strand, within CSW01_17105at 514.397 kb on - strand, within CSW01_17105at 514.397 kb on - strand, within CSW01_17105at 514.397 kb on - strand, within CSW01_17105at 514.442 kb on + strand, within CSW01_17105at 514.563 kb on - strand, within CSW01_17105at 514.591 kb on + strand, within CSW01_17105at 514.604 kb on + strand, within CSW01_17105at 514.711 kb on + strand, within CSW01_17105at 514.726 kb on + strand, within CSW01_17105at 514.734 kb on - strand, within CSW01_17105at 514.740 kb on + strand, within CSW01_17105at 514.750 kb on - strand, within CSW01_17105at 514.826 kb on - strand, within CSW01_17105at 514.829 kb on + strand, within CSW01_17105at 514.829 kb on + strand, within CSW01_17105at 514.837 kb on - strand, within CSW01_17105at 514.892 kb on + strand, within CSW01_17105at 514.920 kb on + strand, within CSW01_17105at 514.975 kb on + strand, within CSW01_17105at 514.975 kb on + strand, within CSW01_17105at 514.985 kb on - strand, within CSW01_17105at 515.000 kb on + strand, within CSW01_17105at 515.005 kb on + strand, within CSW01_17105at 515.005 kb on + strand, within CSW01_17105at 515.005 kb on + strand, within CSW01_17105at 515.025 kb on - strandat 515.044 kb on - strandat 515.057 kb on + strandat 515.058 kb on - strandat 515.065 kb on - strandat 515.070 kb on - strandat 515.078 kb on + strandat 515.091 kb on + strandat 515.099 kb on - strandat 515.099 kb on - strandat 515.182 kb on - strandat 515.435 kb on + strandat 515.456 kb on + strandat 515.456 kb on + strandat 515.456 kb on + strandat 515.461 kb on + strandat 515.461 kb on + strandat 515.464 kb on - strandat 515.464 kb on - strandat 515.464 kb on - strandat 515.469 kb on - strandat 515.536 kb on + strandat 515.558 kb on - strandat 515.578 kb on - strandat 515.596 kb on + strandat 515.604 kb on - strandat 515.632 kb on + strandat 515.645 kb on - strandat 515.645 kb on - strandat 515.649 kb on + strandat 515.725 kb on - strand, within CSW01_17115at 515.727 kb on + strand, within CSW01_17115at 516.071 kb on - strand, within CSW01_17115at 516.077 kb on + strand, within CSW01_17115at 516.153 kb on + strand, within CSW01_17115

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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512,159 + CSW01_17100 0.16 -0.0
512,165 + CSW01_17100 0.16 -1.0
512,167 - CSW01_17100 0.17 -2.2
512,173 - CSW01_17100 0.17 -1.3
512,189 + CSW01_17100 0.19 -2.1
512,333 + CSW01_17100 0.35 +0.4
512,363 - CSW01_17100 0.39 -1.5
512,388 + CSW01_17100 0.41 +0.1
512,396 - CSW01_17100 0.42 -1.7
512,412 + CSW01_17100 0.44 -2.0
512,557 - CSW01_17100 0.60 +1.2
512,597 + CSW01_17100 0.65 +0.6
512,605 - CSW01_17100 0.66 -1.0
512,654 + CSW01_17100 0.71 +0.7
512,687 + CSW01_17100 0.75 -2.7
512,695 - CSW01_17100 0.76 -0.5
512,695 - CSW01_17100 0.76 -0.9
512,765 + CSW01_17100 0.84 +0.7
512,816 + CSW01_17100 0.90 -1.0
512,819 - +0.7
512,824 - -1.1
512,856 + -0.1
512,891 - -1.5
512,891 - -0.3
513,134 + +0.2
513,295 - +0.7
513,311 - -0.6
513,570 + CSW01_17105 0.21 -0.2
513,570 + CSW01_17105 0.21 +1.4
513,571 - CSW01_17105 0.21 -1.6
513,578 - CSW01_17105 0.22 +0.5
513,578 - CSW01_17105 0.22 -0.0
513,637 + CSW01_17105 0.24 +1.0
513,694 + CSW01_17105 0.27 -1.2
513,701 + CSW01_17105 0.27 -2.4
513,741 + CSW01_17105 0.29 +0.7
513,846 - CSW01_17105 0.34 +0.7
513,917 + CSW01_17105 0.38 -0.4
513,930 - CSW01_17105 0.38 +0.6
513,966 + CSW01_17105 0.40 +0.8
513,967 - CSW01_17105 0.40 +1.5
513,973 + CSW01_17105 0.40 +1.3
513,974 - CSW01_17105 0.40 -2.2
514,319 + CSW01_17105 0.57 +2.0
514,337 - CSW01_17105 0.58 -0.4
514,351 - CSW01_17105 0.58 -0.1
514,389 + CSW01_17105 0.60 -1.2
514,389 + CSW01_17105 0.60 -0.2
514,397 - CSW01_17105 0.61 -1.0
514,397 - CSW01_17105 0.61 +0.0
514,397 - CSW01_17105 0.61 -0.0
514,397 - CSW01_17105 0.61 -0.2
514,397 - CSW01_17105 0.61 +0.2
514,442 + CSW01_17105 0.63 +0.2
514,563 - CSW01_17105 0.69 +0.3
514,591 + CSW01_17105 0.70 -0.8
514,604 + CSW01_17105 0.71 +0.6
514,711 + CSW01_17105 0.76 -0.1
514,726 + CSW01_17105 0.76 -0.6
514,734 - CSW01_17105 0.77 -0.6
514,740 + CSW01_17105 0.77 -0.1
514,750 - CSW01_17105 0.77 -0.8
514,826 - CSW01_17105 0.81 -0.5
514,829 + CSW01_17105 0.81 -0.2
514,829 + CSW01_17105 0.81 -0.5
514,837 - CSW01_17105 0.82 +0.2
514,892 + CSW01_17105 0.84 +1.1
514,920 + CSW01_17105 0.86 -0.1
514,975 + CSW01_17105 0.88 +0.9
514,975 + CSW01_17105 0.88 -2.4
514,985 - CSW01_17105 0.89 -0.7
515,000 + CSW01_17105 0.89 -2.6
515,005 + CSW01_17105 0.90 -2.3
515,005 + CSW01_17105 0.90 +1.7
515,005 + CSW01_17105 0.90 +0.1
515,025 - +1.2
515,044 - +0.2
515,057 + +0.2
515,058 - -0.1
515,065 - -1.7
515,070 - -0.3
515,078 + +1.0
515,091 + +0.3
515,099 - +0.6
515,099 - +0.7
515,182 - +1.0
515,435 + -3.4
515,456 + +0.1
515,456 + +0.4
515,456 + -0.0
515,461 + +0.9
515,461 + -0.9
515,464 - +0.8
515,464 - -1.0
515,464 - -1.5
515,469 - -1.4
515,536 + -2.2
515,558 - +0.5
515,578 - -1.6
515,596 + +1.4
515,604 - -2.3
515,632 + -0.9
515,645 - +1.0
515,645 - -0.7
515,649 + +0.2
515,725 - CSW01_17115 0.11 +2.0
515,727 + CSW01_17115 0.11 -0.3
516,071 - CSW01_17115 0.31 +0.9
516,077 + CSW01_17115 0.31 +0.8
516,153 + CSW01_17115 0.36 +1.0

Or see this region's nucleotide sequence