Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17030 and CSW01_17035 are separated by 9 nucleotides CSW01_17035 and CSW01_17040 are separated by 292 nucleotides CSW01_17040 and CSW01_17045 are separated by 11 nucleotides
CSW01_17030: CSW01_17030 - competence protein ComFB, at 497,453 to 497,827
_17030
CSW01_17035: CSW01_17035 - transcriptional regulator, at 497,837 to 498,115
_17035
CSW01_17040: CSW01_17040 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha, at 498,408 to 499,946
_17040
CSW01_17045: CSW01_17045 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 499,958 to 501,334
_17045
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.516 kb on + strand, within CSW01_17030 at 497.524 kb on - strand, within CSW01_17030 at 497.563 kb on - strand, within CSW01_17030 at 497.563 kb on - strand, within CSW01_17030 at 497.565 kb on + strand, within CSW01_17030 at 497.565 kb on + strand, within CSW01_17030 at 497.599 kb on - strand, within CSW01_17030 at 497.692 kb on + strand, within CSW01_17030 at 497.805 kb on + strand at 497.898 kb on - strand, within CSW01_17035 at 498.160 kb on + strand at 498.186 kb on - strand at 498.342 kb on + strand at 498.538 kb on + strand at 498.771 kb on - strand, within CSW01_17040 at 498.820 kb on - strand, within CSW01_17040 at 498.833 kb on + strand, within CSW01_17040 at 498.897 kb on - strand, within CSW01_17040 at 499.074 kb on + strand, within CSW01_17040 at 499.236 kb on - strand, within CSW01_17040 at 499.324 kb on + strand, within CSW01_17040 at 499.360 kb on - strand, within CSW01_17040 at 499.464 kb on + strand, within CSW01_17040 at 499.505 kb on + strand, within CSW01_17040 at 499.539 kb on - strand, within CSW01_17040 at 499.596 kb on - strand, within CSW01_17040 at 499.606 kb on - strand, within CSW01_17040 at 499.629 kb on + strand, within CSW01_17040 at 499.753 kb on - strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.772 kb on - strand, within CSW01_17040 at 499.772 kb on - strand, within CSW01_17040 at 499.772 kb on - strand, within CSW01_17040 at 499.900 kb on + strand at 499.980 kb on - strand at 500.205 kb on + strand, within CSW01_17045 at 500.213 kb on - strand, within CSW01_17045 at 500.233 kb on - strand, within CSW01_17045 at 500.240 kb on - strand, within CSW01_17045 at 500.260 kb on - strand, within CSW01_17045 at 500.622 kb on - strand, within CSW01_17045 at 500.622 kb on - strand, within CSW01_17045 at 500.656 kb on + strand, within CSW01_17045 at 500.669 kb on - strand, within CSW01_17045
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 497,516 + CSW01_17030 0.17 -0.9 497,524 - CSW01_17030 0.19 -0.4 497,563 - CSW01_17030 0.29 +0.2 497,563 - CSW01_17030 0.29 -0.4 497,565 + CSW01_17030 0.30 -0.5 497,565 + CSW01_17030 0.30 -1.7 497,599 - CSW01_17030 0.39 +1.9 497,692 + CSW01_17030 0.64 +0.5 497,805 + +0.9 497,898 - CSW01_17035 0.22 -0.5 498,160 + -0.4 498,186 - -1.6 498,342 + +0.8 498,538 + -1.8 498,771 - CSW01_17040 0.24 -0.1 498,820 - CSW01_17040 0.27 -0.3 498,833 + CSW01_17040 0.28 +1.1 498,897 - CSW01_17040 0.32 -3.2 499,074 + CSW01_17040 0.43 -0.1 499,236 - CSW01_17040 0.54 -0.1 499,324 + CSW01_17040 0.60 +1.2 499,360 - CSW01_17040 0.62 +1.2 499,464 + CSW01_17040 0.69 +0.7 499,505 + CSW01_17040 0.71 +0.3 499,539 - CSW01_17040 0.73 +1.1 499,596 - CSW01_17040 0.77 -1.5 499,606 - CSW01_17040 0.78 -1.2 499,629 + CSW01_17040 0.79 +1.0 499,753 - CSW01_17040 0.87 +0.5 499,764 + CSW01_17040 0.88 +0.6 499,764 + CSW01_17040 0.88 +0.4 499,764 + CSW01_17040 0.88 +0.4 499,764 + CSW01_17040 0.88 +2.7 499,772 - CSW01_17040 0.89 +1.2 499,772 - CSW01_17040 0.89 +1.1 499,772 - CSW01_17040 0.89 +2.3 499,900 + -0.1 499,980 - -2.0 500,205 + CSW01_17045 0.18 +1.4 500,213 - CSW01_17045 0.19 +0.5 500,233 - CSW01_17045 0.20 +1.0 500,240 - CSW01_17045 0.20 +0.6 500,260 - CSW01_17045 0.22 -0.5 500,622 - CSW01_17045 0.48 +0.8 500,622 - CSW01_17045 0.48 +0.4 500,656 + CSW01_17045 0.51 +0.3 500,669 - CSW01_17045 0.52 -0.0
Or see this region's nucleotide sequence